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  5. Cre07.g330950

Cre07.g330950


Description : Vesicle trafficking.endomembrane trafficking.vacuolar sorting.AP-4 vacuole cargo adaptor complex.AP4S small sigma subunit


Gene families : OG0000560 (Archaeplastida) Phylogenetic Tree(s): OG0000560_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cre07.g330950
Cluster HCCA: Cluster_91

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00071p00057620 evm_27.TU.AmTr_v1... Vesicle trafficking.clathrin coated vesicle (CCV)... 0.03 Archaeplastida
AMTR_s00079p00186170 evm_27.TU.AmTr_v1... Vesicle trafficking.clathrin coated vesicle (CCV)... 0.04 Archaeplastida
AMTR_s00147p00042930 evm_27.TU.AmTr_v1... AP-1 complex subunit sigma-2 OS=Arabidopsis thaliana 0.01 Archaeplastida
AT4G35410 No alias Clathrin adaptor complex small chain family protein 0.02 Archaeplastida
Cpa|evm.model.tig00021127.177 No alias Vesicle trafficking.clathrin coated vesicle (CCV)... 0.02 Archaeplastida
GSVIVT01009900001 No alias Vesicle trafficking.clathrin coated vesicle (CCV)... 0.02 Archaeplastida
GSVIVT01013725001 No alias Vesicle trafficking.clathrin coated vesicle (CCV)... 0.02 Archaeplastida
GSVIVT01015270001 No alias Vesicle trafficking.endomembrane trafficking.vacuolar... 0.05 Archaeplastida
GSVIVT01028912001 No alias Vesicle trafficking.clathrin coated vesicle (CCV)... 0.02 Archaeplastida
LOC_Os01g25110.1 No alias AP-3 complex subunit sigma OS=Arabidopsis thaliana... 0.01 Archaeplastida
LOC_Os03g57040.1 No alias small subunit sigma of AP-1 trans-Golgi network cargo... 0.07 Archaeplastida
LOC_Os12g10560.1 No alias small subunit sigma of AP-2 cargo adaptor complex 0.04 Archaeplastida
MA_130401g0010 No alias small subunit sigma of AP-1 trans-Golgi network cargo... 0.04 Archaeplastida
MA_9040447g0010 No alias AP-4 complex subunit sigma OS=Arabidopsis thaliana... 0.02 Archaeplastida
Mp1g27490.1 No alias small subunit sigma of AP-1 trans-Golgi network cargo... 0.04 Archaeplastida
Pp3c9_6760V3.1 No alias SNARE-like superfamily protein 0.02 Archaeplastida
Solyc01g109640.3.1 No alias small subunit sigma of AP-3 Golgi to vacuole cargo... 0.02 Archaeplastida
Solyc02g085240.4.1 No alias small subunit sigma of AP-3 Golgi to vacuole cargo... 0.03 Archaeplastida
Solyc04g081410.3.1 No alias small subunit sigma of AP-2 cargo adaptor complex 0.04 Archaeplastida
Solyc11g005220.2.1 No alias small subunit sigma of AP-1 trans-Golgi network cargo... 0.03 Archaeplastida
Zm00001e005895_P003 No alias small subunit sigma of AP-1 trans-Golgi network cargo... 0.04 Archaeplastida
Zm00001e006131_P001 No alias small subunit sigma of AP-1 trans-Golgi network cargo... 0.02 Archaeplastida
Zm00001e011050_P001 No alias small subunit sigma of AP-2 cargo adaptor complex 0.02 Archaeplastida
Zm00001e018362_P003 No alias small subunit sigma of AP-2 cargo adaptor complex 0.02 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000151 ubiquitin ligase complex IEP Neighborhood
CC GO:0000152 nuclear ubiquitin ligase complex IEP Neighborhood
MF GO:0001882 nucleoside binding IEP Neighborhood
MF GO:0001883 purine nucleoside binding IEP Neighborhood
MF GO:0003924 GTPase activity IEP Neighborhood
MF GO:0004175 endopeptidase activity IEP Neighborhood
MF GO:0004298 threonine-type endopeptidase activity IEP Neighborhood
MF GO:0005525 GTP binding IEP Neighborhood
CC GO:0005575 cellular_component IEP Neighborhood
CC GO:0005680 anaphase-promoting complex IEP Neighborhood
CC GO:0005839 proteasome core complex IEP Neighborhood
BP GO:0006508 proteolysis IEP Neighborhood
CC GO:0016021 integral component of membrane IEP Neighborhood
BP GO:0016192 vesicle-mediated transport IEP Neighborhood
MF GO:0016757 transferase activity, transferring glycosyl groups IEP Neighborhood
MF GO:0019001 guanyl nucleotide binding IEP Neighborhood
CC GO:0031224 intrinsic component of membrane IEP Neighborhood
CC GO:0031461 cullin-RING ubiquitin ligase complex IEP Neighborhood
MF GO:0032549 ribonucleoside binding IEP Neighborhood
MF GO:0032550 purine ribonucleoside binding IEP Neighborhood
MF GO:0032561 guanyl ribonucleotide binding IEP Neighborhood
CC GO:0044425 membrane part IEP Neighborhood
BP GO:0051603 proteolysis involved in cellular protein catabolic process IEP Neighborhood
MF GO:0070003 threonine-type peptidase activity IEP Neighborhood
InterPro domains Description Start Stop
IPR022775 AP_mu_sigma_su 1 142
No external refs found!