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  5. AMTR_s00049p00223850

AMTR_s00049p00223850 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00049.266

Description : Pentatricopeptide repeat-containing protein At3g48250, chloroplastic OS=Arabidopsis thaliana


Gene families : OG0008558 (Archaeplastida) Phylogenetic Tree(s): OG0008558_tree ,
OG_05_0007784 (LandPlants) Phylogenetic Tree(s): OG_05_0007784_tree ,
OG_06_0005602 (SeedPlants) Phylogenetic Tree(s): OG_06_0005602_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00049p00223850
Cluster HCCA: Cluster_231

Target Alias Description ECC score Gene Family Method Actions
AT3G02490 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Archaeplastida
AT5G15980 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Archaeplastida
GSVIVT01036493001 No alias Pentatricopeptide repeat-containing protein At3g02490,... 0.03 Archaeplastida
LOC_Os01g73950.1 No alias Pentatricopeptide repeat-containing protein At3g48250,... 0.02 Archaeplastida
MA_41368g0010 No alias Pentatricopeptide repeat-containing protein At3g48250,... 0.03 Archaeplastida
Zm00001e018513_P001 No alias Pentatricopeptide repeat-containing protein At3g48250,... 0.04 Archaeplastida
Zm00001e028261_P001 No alias Pentatricopeptide repeat-containing protein At3g48250,... 0.03 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0004812 aminoacyl-tRNA ligase activity IEP Neighborhood
CC GO:0005694 chromosome IEP Neighborhood
BP GO:0006418 tRNA aminoacylation for protein translation IEP Neighborhood
BP GO:0006996 organelle organization IEP Neighborhood
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP Neighborhood
MF GO:0031072 heat shock protein binding IEP Neighborhood
BP GO:0043038 amino acid activation IEP Neighborhood
BP GO:0043039 tRNA aminoacylation IEP Neighborhood
MF GO:0051082 unfolded protein binding IEP Neighborhood
BP GO:0051276 chromosome organization IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 344 376
IPR002885 Pentatricopeptide_repeat 379 410
IPR002885 Pentatricopeptide_repeat 457 484
IPR002885 Pentatricopeptide_repeat 208 238
IPR002885 Pentatricopeptide_repeat 421 453
No external refs found!