1. Home
  2. Species
  3. Chlamydomonas reinhardtii
  4. Sequence
  5. Cre07.g345050

Cre07.g345050


Description : RNA biosynthesis.transcriptional activation.SBP transcription factor


Gene families : OG0000102 (Archaeplastida) Phylogenetic Tree(s): OG0000102_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cre07.g345050
Cluster HCCA: Cluster_48

Target Alias Description ECC score Gene Family Method Actions
AT1G20980 SPL1R2, ATSPL14,... squamosa promoter binding protein-like 14 0.01 Archaeplastida
AT1G69170 No alias Squamosa promoter-binding protein-like (SBP domain)... 0.02 Archaeplastida
AT1G76580 No alias Squamosa promoter-binding protein-like (SBP domain)... 0.02 Archaeplastida
AT3G60030 SPL12 squamosa promoter-binding protein-like 12 0.02 Archaeplastida
GSVIVT01017678001 No alias RNA biosynthesis.transcriptional activation.SBP... 0.02 Archaeplastida
LOC_Os08g40260.1 No alias transcription factor (SBP) 0.01 Archaeplastida
MA_52027g0010 No alias transcription factor (SBP) 0.01 Archaeplastida
Zm00001e013761_P001 No alias transcription factor (SBP) 0.01 Archaeplastida
Zm00001e017451_P001 No alias transcription factor (SBP) 0.01 Archaeplastida
Zm00001e021962_P003 No alias transcription factor (SBP) 0.01 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
CC GO:0005634 nucleus IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
CC GO:0000145 exocyst IEP Neighborhood
BP GO:0000375 RNA splicing, via transesterification reactions IEP Neighborhood
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Neighborhood
BP GO:0000398 mRNA splicing, via spliceosome IEP Neighborhood
MF GO:0003909 DNA ligase activity IEP Neighborhood
MF GO:0003910 DNA ligase (ATP) activity IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
MF GO:0005543 phospholipid binding IEP Neighborhood
BP GO:0006310 DNA recombination IEP Neighborhood
BP GO:0006904 vesicle docking involved in exocytosis IEP Neighborhood
MF GO:0008134 transcription factor binding IEP Neighborhood
MF GO:0008289 lipid binding IEP Neighborhood
BP GO:0008380 RNA splicing IEP Neighborhood
MF GO:0016886 ligase activity, forming phosphoric ester bonds IEP Neighborhood
MF GO:0017025 TBP-class protein binding IEP Neighborhood
BP GO:0022406 membrane docking IEP Neighborhood
MF GO:0035091 phosphatidylinositol binding IEP Neighborhood
CC GO:0044448 cell cortex part IEP Neighborhood
BP GO:0048278 vesicle docking IEP Neighborhood
BP GO:0051640 organelle localization IEP Neighborhood
BP GO:0070647 protein modification by small protein conjugation or removal IEP Neighborhood
CC GO:0099023 tethering complex IEP Neighborhood
BP GO:0140029 exocytic process IEP Neighborhood
BP GO:0140056 organelle localization by membrane tethering IEP Neighborhood
InterPro domains Description Start Stop
IPR004333 SBP_dom 206 279
No external refs found!