Cre07.g345900

No description available

Gene families : OG0000221 (Archaeplastida) Phylogenetic Tree(s): OG0000221_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Cre07.g345900
Cluster	HCCA: Cluster_95

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00018p00015000	evm_27.TU.AmTr_v1...	RNA biosynthesis.siRNA biogenesis.DCL-type endoribonuclease	0.02	Archaeplastida
AT1G01040	DCL1, CAF,...	dicer-like 1	0.02	Archaeplastida
AT5G20320	DCL4, ATDCL4	dicer-like 4	0.04	Archaeplastida
Cpa\|evm.model.tig00000741.30	No alias	No description available	0.03	Archaeplastida
GSVIVT01001045001	No alias	RNA biosynthesis.siRNA biogenesis.DRB4-DRB7.1 regulator...	0.03	Archaeplastida
Gb_34257	No alias	Endoribonuclease Dicer homolog 4 OS=Oryza sativa subsp....	0.03	Archaeplastida
LOC_Os04g43050.1	No alias	endoribonuclease (DCL4)	0.02	Archaeplastida
MA_10432726g0010	No alias	Endoribonuclease Dicer homolog 1 OS=Oryza sativa subsp....	0.02	Archaeplastida
MA_10437243g0010	No alias	endoribonuclease component DCL1 of DCL1-HYL1 miRNA...	0.02	Archaeplastida
MA_10437243g0020	No alias	Endoribonuclease Dicer homolog 1 OS=Arabidopsis thaliana...	0.03	Archaeplastida
MA_108060g0010	No alias	Endoribonuclease Dicer homolog 3a OS=Oryza sativa subsp....	0.01	Archaeplastida
Zm00001e000158_P001	No alias	endoribonuclease component DCL1 of DCL1-HYL1 miRNA...	0.04	Archaeplastida
Zm00001e018890_P004	No alias	endoribonuclease (DCL3)	0.02	Archaeplastida
Zm00001e041209_P001	No alias	endoribonuclease (DCL4). component DRB7 of DRB4-DRB7.1...	0.03	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004518	nuclease activity	None	Extended
MF	GO:0004519	endonuclease activity	None	Extended
MF	GO:0004521	endoribonuclease activity	None	Extended
MF	GO:0004525	ribonuclease III activity	IEA	Interproscan
MF	GO:0004540	ribonuclease activity	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006396	RNA processing	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016788	hydrolase activity, acting on ester bonds	None	Extended
MF	GO:0016891	endoribonuclease activity, producing 5'-phosphomonoesters	None	Extended
MF	GO:0016893	endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters	None	Extended
MF	GO:0032296	double-stranded RNA-specific ribonuclease activity	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0140098	catalytic activity, acting on RNA	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000184	nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	IEP	Neighborhood
BP	GO:0000956	nuclear-transcribed mRNA catabolic process	IEP	Neighborhood
BP	GO:0001510	RNA methylation	IEP	Neighborhood
MF	GO:0004674	protein serine/threonine kinase activity	IEP	Neighborhood
BP	GO:0006401	RNA catabolic process	IEP	Neighborhood
BP	GO:0006402	mRNA catabolic process	IEP	Neighborhood
BP	GO:0009452	7-methylguanosine RNA capping	IEP	Neighborhood
BP	GO:0009892	negative regulation of metabolic process	IEP	Neighborhood
BP	GO:0010605	negative regulation of macromolecule metabolic process	IEP	Neighborhood
BP	GO:0010629	negative regulation of gene expression	IEP	Neighborhood
BP	GO:0036260	RNA capping	IEP	Neighborhood
BP	GO:0043414	macromolecule methylation	IEP	Neighborhood
BP	GO:0048519	negative regulation of biological process	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR005034	Dicer_dimerisation_dom	1459	1550
IPR001650	Helicase_C	1229	1286
IPR000999	RNase_III_dom	2935	3101
IPR000999	RNase_III_dom	3833	4041

External Links

No external refs found!

Cre07.g345900

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation