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  5. Cre08.g358250

Cre08.g358250


Description : Pentatricopeptide repeat-containing protein At5g02860 OS=Arabidopsis thaliana


Gene families : OG0000000 (Archaeplastida) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cre08.g358250
Cluster HCCA: Cluster_32

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00003p00263110 No alias Pentatricopeptide repeat-containing protein At1g03540... 0.01 Archaeplastida
AMTR_s00004p00076010 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At4g13650... 0.03 Archaeplastida
AMTR_s00008p00232800 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At4g32430,... 0.02 Archaeplastida
AMTR_s00008p00241920 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.02 Archaeplastida
AMTR_s00014p00068600 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g43980,... 0.02 Archaeplastida
AMTR_s00016p00166520 evm_27.TU.AmTr_v1... RNA processing.organelle machineries.RNA... 0.02 Archaeplastida
AMTR_s00022p00075660 No alias Pentatricopeptide repeat-containing protein At2g33680... 0.02 Archaeplastida
AMTR_s00024p00225420 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At2g13600... 0.01 Archaeplastida
AMTR_s00025p00155620 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At4g33170... 0.02 Archaeplastida
AMTR_s00025p00244370 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At3g05340... 0.02 Archaeplastida
AMTR_s00029p00204910 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At4g19191,... 0.02 Archaeplastida
AMTR_s00031p00067070 No alias Pentatricopeptide repeat-containing protein At5g03800... 0.01 Archaeplastida
AMTR_s00038p00071780 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At3g26540... 0.03 Archaeplastida
AMTR_s00045p00048330 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At3g53360,... 0.02 Archaeplastida
AMTR_s00046p00214930 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g11290,... 0.02 Archaeplastida
AMTR_s00049p00210350 evm_27.TU.AmTr_v1... Putative pentatricopeptide repeat-containing protein... 0.01 Archaeplastida
AMTR_s00053p00090700 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At3g13880... 0.03 Archaeplastida
AMTR_s00056p00185560 No alias RNA processing.organelle machineries.RNA... 0.02 Archaeplastida
AMTR_s00057p00137550 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At2g36980,... 0.02 Archaeplastida
AMTR_s00057p00151990 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At4g13650... 0.03 Archaeplastida
AMTR_s00061p00127300 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At3g12770... 0.02 Archaeplastida
AMTR_s00063p00172440 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At4g13650... 0.01 Archaeplastida
AMTR_s00065p00031420 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At2g33680... 0.01 Archaeplastida
AMTR_s00068p00072270 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At2g27610... 0.02 Archaeplastida
AMTR_s00071p00184210 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At4g13650... 0.02 Archaeplastida
AMTR_s00077p00031710 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At2g27610... 0.01 Archaeplastida
AMTR_s00081p00019740 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At5g27110... 0.02 Archaeplastida
AMTR_s00081p00056740 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g08070,... 0.02 Archaeplastida
AMTR_s00122p00115170 No alias RNA processing.organelle machineries.RNA... 0.03 Archaeplastida
AMTR_s00130p00019530 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein DOT4,... 0.01 Archaeplastida
AMTR_s00137p00065490 No alias Putative pentatricopeptide repeat-containing protein... 0.03 Archaeplastida
AMTR_s00147p00097570 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At2g03880,... 0.02 Archaeplastida
AT1G11290 CRR22 Pentatricopeptide repeat (PPR) superfamily protein 0.01 Archaeplastida
AT1G18485 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Archaeplastida
AT3G29230 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Archaeplastida
AT3G49170 EMB2261 Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Archaeplastida
AT4G18750 DOT4 Pentatricopeptide repeat (PPR) superfamily protein 0.02 Archaeplastida
AT4G21065 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Archaeplastida
AT5G48910 LPA66 Pentatricopeptide repeat (PPR) superfamily protein 0.03 Archaeplastida
Cpa|evm.model.tig00001038.5 No alias No description available 0.02 Archaeplastida
GSVIVT01007983001 No alias Pentatricopeptide repeat-containing protein At4g21065... 0.02 Archaeplastida
GSVIVT01009407001 No alias Pentatricopeptide repeat-containing protein At2g27610... 0.02 Archaeplastida
GSVIVT01009789001 No alias Pentatricopeptide repeat-containing protein At1g19720... 0.02 Archaeplastida
GSVIVT01011333001 No alias Pentatricopeptide repeat-containing protein At1g08070,... 0.02 Archaeplastida
GSVIVT01012461001 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.03 Archaeplastida
GSVIVT01013023001 No alias Pentatricopeptide repeat-containing protein At1g31920... 0.03 Archaeplastida
GSVIVT01017365001 No alias Putative pentatricopeptide repeat-containing protein... 0.02 Archaeplastida
GSVIVT01020091001 No alias RNA processing.organelle machineries.RNA... 0.02 Archaeplastida
GSVIVT01023971001 No alias Pentatricopeptide repeat-containing protein At4g35130,... 0.02 Archaeplastida
GSVIVT01027077001 No alias RNA processing.organelle machineries.RNA... 0.01 Archaeplastida
GSVIVT01036142001 No alias Pentatricopeptide repeat-containing protein At5g66520... 0.02 Archaeplastida
Gb_06185 No alias Pentatricopeptide repeat-containing protein At3g46790,... 0.02 Archaeplastida
Gb_14324 No alias Pentatricopeptide repeat-containing protein DOT4,... 0.02 Archaeplastida
Gb_16448 No alias Pentatricopeptide repeat-containing protein At3g03580... 0.02 Archaeplastida
Gb_20910 No alias Putative pentatricopeptide repeat-containing protein... 0.02 Archaeplastida
Gb_23678 No alias Pentatricopeptide repeat-containing protein At3g46790,... 0.02 Archaeplastida
Gb_25129 No alias RNA editing factor (ECD1) 0.02 Archaeplastida
Gb_26526 No alias Pentatricopeptide repeat-containing protein At1g20230... 0.02 Archaeplastida
Gb_31034 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.02 Archaeplastida
Gb_36806 No alias Pentatricopeptide repeat-containing protein At2g27610... 0.03 Archaeplastida
LOC_Os06g02200.1 No alias RNA editing factor (CRR22) 0.02 Archaeplastida
LOC_Os07g07620.1 No alias Pentatricopeptide repeat-containing protein At5g03800... 0.02 Archaeplastida
LOC_Os07g44170.1 No alias Pentatricopeptide repeat-containing protein At4g33990... 0.01 Archaeplastida
LOC_Os10g39460.2 No alias Putative pentatricopeptide repeat-containing protein... 0.02 Archaeplastida
MA_103698g0030 No alias Putative pentatricopeptide repeat-containing protein... 0.02 Archaeplastida
MA_10426444g0010 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.02 Archaeplastida
MA_10431227g0020 No alias Pentatricopeptide repeat-containing protein At3g57430,... 0.02 Archaeplastida
MA_11074g0010 No alias Pentatricopeptide repeat-containing protein At3g57430,... 0.02 Archaeplastida
MA_123466g0010 No alias Pentatricopeptide repeat-containing protein At3g57430,... 0.02 Archaeplastida
MA_135075g0020 No alias Pentatricopeptide repeat-containing protein At3g57430,... 0.02 Archaeplastida
MA_20622g0010 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.02 Archaeplastida
MA_381817g0020 No alias Pentatricopeptide repeat-containing protein At2g22070... 0.03 Archaeplastida
MA_385322g0010 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.04 Archaeplastida
MA_4438g0010 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.01 Archaeplastida
MA_71104g0010 No alias Pentatricopeptide repeat-containing protein At3g12770... 0.03 Archaeplastida
MA_72886g0010 No alias Pentatricopeptide repeat-containing protein At5g50390,... 0.03 Archaeplastida
MA_82595g0010 No alias Putative pentatricopeptide repeat-containing protein... 0.02 Archaeplastida
MA_94165g0010 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.01 Archaeplastida
MA_9526611g0020 No alias Pentatricopeptide repeat-containing protein At3g57430,... 0.01 Archaeplastida
Pp3c24_8560V3.1 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Archaeplastida
Pp3c6_23550V3.1 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Archaeplastida
Smo101 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.02 Archaeplastida
Smo101455 No alias Pentatricopeptide repeat-containing protein At1g08070,... 0.02 Archaeplastida
Smo107260 No alias Pentatricopeptide repeat-containing protein At4g14820... 0.02 Archaeplastida
Smo11063 No alias Pentatricopeptide repeat-containing protein At2g34400... 0.05 Archaeplastida
Smo123298 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.04 Archaeplastida
Smo128850 No alias Pentatricopeptide repeat-containing protein At3g09040,... 0.02 Archaeplastida
Smo173139 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.03 Archaeplastida
Smo70183 No alias Pentatricopeptide repeat-containing protein At1g08070,... 0.01 Archaeplastida
Smo92610 No alias Pentatricopeptide repeat-containing protein At5g56310... 0.01 Archaeplastida
Smo95815 No alias Pentatricopeptide repeat-containing protein At5g02860... 0.04 Archaeplastida
Solyc01g006920.4.1 No alias Pentatricopeptide repeat-containing protein At4g39530... 0.02 Archaeplastida
Solyc01g081290.4.1 No alias protein kinase (PEPRK) 0.02 Archaeplastida
Solyc01g098150.3.1 No alias Pentatricopeptide repeat-containing protein At5g03800... 0.02 Archaeplastida
Solyc02g088470.1.1 No alias Pentatricopeptide repeat-containing protein At3g29230... 0.02 Archaeplastida
Zm00001e000301_P001 No alias Pentatricopeptide repeat-containing protein At4g35130,... 0.02 Archaeplastida
Zm00001e015727_P001 No alias Pentatricopeptide repeat-containing protein At5g66520... 0.02 Archaeplastida
Zm00001e016923_P001 No alias Pentatricopeptide repeat-containing protein At3g46790,... 0.02 Archaeplastida
Zm00001e020567_P001 No alias RNA editing factor (MEF7) 0.02 Archaeplastida
Zm00001e022858_P001 No alias Pentatricopeptide repeat-containing protein At3g57430,... 0.01 Archaeplastida
Zm00001e029186_P001 No alias Pentatricopeptide repeat-containing protein At1g19720... 0.01 Archaeplastida
Zm00001e031351_P001 No alias RNA editing factor (ECD1) 0.02 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Neighborhood
MF GO:0000295 adenine nucleotide transmembrane transporter activity IEP Neighborhood
MF GO:0003674 molecular_function IEP Neighborhood
MF GO:0003824 catalytic activity IEP Neighborhood
MF GO:0005215 transporter activity IEP Neighborhood
MF GO:0005346 purine ribonucleotide transmembrane transporter activity IEP Neighborhood
MF GO:0005347 ATP transmembrane transporter activity IEP Neighborhood
MF GO:0005471 ATP:ADP antiporter activity IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
MF GO:0005524 ATP binding IEP Neighborhood
BP GO:0006733 oxidoreduction coenzyme metabolic process IEP Neighborhood
BP GO:0006810 transport IEP Neighborhood
BP GO:0006862 nucleotide transport IEP Neighborhood
MF GO:0008144 drug binding IEP Neighborhood
MF GO:0008509 anion transmembrane transporter activity IEP Neighborhood
MF GO:0008514 organic anion transmembrane transporter activity IEP Neighborhood
MF GO:0008987 quinolinate synthetase A activity IEP Neighborhood
BP GO:0009435 NAD biosynthetic process IEP Neighborhood
MF GO:0015075 ion transmembrane transporter activity IEP Neighborhood
MF GO:0015215 nucleotide transmembrane transporter activity IEP Neighborhood
MF GO:0015216 purine nucleotide transmembrane transporter activity IEP Neighborhood
MF GO:0015217 ADP transmembrane transporter activity IEP Neighborhood
MF GO:0015238 drug transmembrane transporter activity IEP Neighborhood
MF GO:0015297 antiporter activity IEP Neighborhood
MF GO:0015301 anion:anion antiporter activity IEP Neighborhood
MF GO:0015399 primary active transmembrane transporter activity IEP Neighborhood
MF GO:0015405 P-P-bond-hydrolysis-driven transmembrane transporter activity IEP Neighborhood
MF GO:0015605 organophosphate ester transmembrane transporter activity IEP Neighborhood
BP GO:0015748 organophosphate ester transport IEP Neighborhood
BP GO:0015931 nucleobase-containing compound transport IEP Neighborhood
MF GO:0015932 nucleobase-containing compound transmembrane transporter activity IEP Neighborhood
CC GO:0016021 integral component of membrane IEP Neighborhood
MF GO:0016462 pyrophosphatase activity IEP Neighborhood
MF GO:0016701 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen IEP Neighborhood
MF GO:0016702 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen IEP Neighborhood
MF GO:0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups IEP Neighborhood
MF GO:0016787 hydrolase activity IEP Neighborhood
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Neighborhood
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP Neighborhood
MF GO:0016887 ATPase activity IEP Neighborhood
MF GO:0017076 purine nucleotide binding IEP Neighborhood
MF GO:0017111 nucleoside-triphosphatase activity IEP Neighborhood
BP GO:0019359 nicotinamide nucleotide biosynthetic process IEP Neighborhood
BP GO:0019362 pyridine nucleotide metabolic process IEP Neighborhood
BP GO:0019363 pyridine nucleotide biosynthetic process IEP Neighborhood
BP GO:0019674 NAD metabolic process IEP Neighborhood
MF GO:0022804 active transmembrane transporter activity IEP Neighborhood
MF GO:0022857 transmembrane transporter activity IEP Neighborhood
MF GO:0030554 adenyl nucleotide binding IEP Neighborhood
CC GO:0031224 intrinsic component of membrane IEP Neighborhood
MF GO:0032553 ribonucleotide binding IEP Neighborhood
MF GO:0032555 purine ribonucleotide binding IEP Neighborhood
MF GO:0032559 adenyl ribonucleotide binding IEP Neighborhood
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Neighborhood
MF GO:0036094 small molecule binding IEP Neighborhood
MF GO:0042623 ATPase activity, coupled IEP Neighborhood
MF GO:0042626 ATPase activity, coupled to transmembrane movement of substances IEP Neighborhood
MF GO:0043167 ion binding IEP Neighborhood
MF GO:0043168 anion binding IEP Neighborhood
MF GO:0043492 ATPase activity, coupled to movement of substances IEP Neighborhood
CC GO:0044425 membrane part IEP Neighborhood
BP GO:0046496 nicotinamide nucleotide metabolic process IEP Neighborhood
BP GO:0051179 localization IEP Neighborhood
MF GO:0051213 dioxygenase activity IEP Neighborhood
BP GO:0051234 establishment of localization IEP Neighborhood
MF GO:0051536 iron-sulfur cluster binding IEP Neighborhood
MF GO:0051539 4 iron, 4 sulfur cluster binding IEP Neighborhood
MF GO:0051540 metal cluster binding IEP Neighborhood
BP GO:0055085 transmembrane transport IEP Neighborhood
BP GO:0072524 pyridine-containing compound metabolic process IEP Neighborhood
BP GO:0072525 pyridine-containing compound biosynthetic process IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
MF GO:0097367 carbohydrate derivative binding IEP Neighborhood
MF GO:0099516 ion antiporter activity IEP Neighborhood
MF GO:1901265 nucleoside phosphate binding IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood
MF GO:1901505 carbohydrate derivative transmembrane transporter activity IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 920 950
IPR002885 Pentatricopeptide_repeat 544 571
IPR002885 Pentatricopeptide_repeat 979 1030
IPR002885 Pentatricopeptide_repeat 457 517
IPR002885 Pentatricopeptide_repeat 398 444
IPR002885 Pentatricopeptide_repeat 852 900
No external refs found!