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  5. AMTR_s00050p00171700

AMTR_s00050p00171700 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00050.38

Description : 4-coumarate--CoA ligase-like 5 OS=Arabidopsis thaliana


Gene families : OG0000179 (Archaeplastida) Phylogenetic Tree(s): OG0000179_tree ,
OG_05_0000459 (LandPlants) Phylogenetic Tree(s): OG_05_0000459_tree ,
OG_06_0000725 (SeedPlants) Phylogenetic Tree(s): OG_06_0000725_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00050p00171700
Cluster HCCA: Cluster_117

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00019p00213640 evm_27.TU.AmTr_v1... Secondary metabolism.phenolics.p-coumaroyl-CoA... 0.04 Archaeplastida
AT1G20510 OPCL1 OPC-8:0 CoA ligase1 0.02 Archaeplastida
GSVIVT01008694001 No alias 4-coumarate--CoA ligase-like 5 OS=Arabidopsis thaliana 0.03 Archaeplastida
LOC_Os01g67530.1 No alias 4-coumarate--CoA ligase-like 5 OS=Oryza sativa subsp.... 0.05 Archaeplastida
LOC_Os03g04000.1 No alias OPC-8:CoA synthetase 0.03 Archaeplastida
LOC_Os08g14760.1 No alias p-coumarate:CoA ligase. 4-coumarate:CoA ligase (4CL) 0.02 Archaeplastida
Pp3c8_730V3.1 No alias acyl-CoA synthetase 5 0.03 Archaeplastida
Smo110329 No alias 4-coumarate--CoA ligase-like 7 OS=Arabidopsis thaliana 0.04 Archaeplastida
Smo177466 No alias 4-coumarate--CoA ligase-like 5 OS=Arabidopsis thaliana 0.04 Archaeplastida
Smo231716 No alias 4-coumarate--CoA ligase-like 7 OS=Arabidopsis thaliana 0.03 Archaeplastida
Smo429785 No alias 4-coumarate--CoA ligase-like 1 OS=Oryza sativa subsp. japonica 0.02 Archaeplastida
Solyc08g076300.3.1 No alias 4-coumarate--CoA ligase-like 6 OS=Arabidopsis thaliana... 0.03 Archaeplastida
Zm00001e037698_P001 No alias p-coumarate:CoA ligase. 4-coumarate:CoA ligase (4CL) 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003824 catalytic activity IEA Interproscan
BP GO:0008152 metabolic process IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0001871 pattern binding IEP Neighborhood
MF GO:0003993 acid phosphatase activity IEP Neighborhood
BP GO:0006184 obsolete GTP catabolic process IEP Neighborhood
MF GO:0016791 phosphatase activity IEP Neighborhood
MF GO:0030246 carbohydrate binding IEP Neighborhood
MF GO:0030247 polysaccharide binding IEP Neighborhood
BP GO:0051258 protein polymerization IEP Neighborhood
InterPro domains Description Start Stop
IPR000873 AMP-dep_Synth/Lig 70 482
No external refs found!