Description : Ubiquitin receptor RAD23b OS=Arabidopsis thaliana

Gene families : OG0001284 (Archaeplastida) Phylogenetic Tree(s): OG0001284_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type Description Actions
Neighborhood HRR: Cre08.g366400
Cluster HCCA: Cluster_50

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00156p00078120 evm_27.TU.AmTr_v1... Probable ubiquitin receptor RAD23 OS=Oryza sativa subsp. japonica 0.05 Archaeplastida
AT5G38470 RAD23D Rad23 UV excision repair protein family 0.04 Archaeplastida
Cpa|evm.model.tig00020848.21 No alias Probable ubiquitin receptor RAD23a OS=Arabidopsis thaliana 0.03 Archaeplastida
LOC_Os06g15360.1 No alias shuttle protein (RAD23) 0.03 Archaeplastida
LOC_Os08g33340.1 No alias shuttle protein (RAD23) 0.07 Archaeplastida
LOC_Os09g24200.1 No alias shuttle protein (RAD23) 0.02 Archaeplastida
Mp1g26290.1 No alias shuttle protein (RAD23) 0.1 Archaeplastida
Pp3c10_8490V3.1 No alias Rad23 UV excision repair protein family 0.02 Archaeplastida
Smo77427 No alias Ubiquitin receptor RAD23b OS=Arabidopsis thaliana 0.03 Archaeplastida
Smo82644 No alias Ubiquitin receptor RAD23b OS=Arabidopsis thaliana 0.03 Archaeplastida
Zm00001e030951_P001 No alias shuttle protein (RAD23) 0.06 Archaeplastida
Zm00001e036768_P002 No alias shuttle protein (RAD23) 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003684 damaged DNA binding IEA Interproscan
BP GO:0006289 nucleotide-excision repair IEA Interproscan
BP GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process IEA Interproscan
Type GO Term Name Evidence Source
CC GO:0000502 proteasome complex IEP Neighborhood
MF GO:0003824 catalytic activity IEP Neighborhood
MF GO:0004175 endopeptidase activity IEP Neighborhood
MF GO:0004298 threonine-type endopeptidase activity IEP Neighborhood
CC GO:0005575 cellular_component IEP Neighborhood
CC GO:0005783 endoplasmic reticulum IEP Neighborhood
CC GO:0005787 signal peptidase complex IEP Neighborhood
CC GO:0005839 proteasome core complex IEP Neighborhood
BP GO:0006465 signal peptide processing IEP Neighborhood
MF GO:0008233 peptidase activity IEP Neighborhood
BP GO:0009894 regulation of catabolic process IEP Neighborhood
BP GO:0016485 protein processing IEP Neighborhood
BP GO:0016579 protein deubiquitination IEP Neighborhood
MF GO:0016787 hydrolase activity IEP Neighborhood
CC GO:0019773 proteasome core complex, alpha-subunit complex IEP Neighborhood
CC GO:0032991 protein-containing complex IEP Neighborhood
BP GO:0042176 regulation of protein catabolic process IEP Neighborhood
CC GO:0043227 membrane-bounded organelle IEP Neighborhood
CC GO:0043231 intracellular membrane-bounded organelle IEP Neighborhood
BP GO:0043248 proteasome assembly IEP Neighborhood
CC GO:0044424 intracellular part IEP Neighborhood
CC GO:0044432 endoplasmic reticulum part IEP Neighborhood
CC GO:0044464 cell part IEP Neighborhood
BP GO:0051246 regulation of protein metabolic process IEP Neighborhood
BP GO:0051604 protein maturation IEP Neighborhood
MF GO:0070003 threonine-type peptidase activity IEP Neighborhood
MF GO:0070011 peptidase activity, acting on L-amino acid peptides IEP Neighborhood
BP GO:0070646 protein modification by small protein removal IEP Neighborhood
MF GO:0140096 catalytic activity, acting on a protein IEP Neighborhood
CC GO:1902494 catalytic complex IEP Neighborhood
CC GO:1905368 peptidase complex IEP Neighborhood
CC GO:1905369 endopeptidase complex IEP Neighborhood
InterPro domains Description Start Stop
IPR000626 Ubiquitin_dom 3 74
IPR015940 UBA 367 402
IPR015940 UBA 157 191
IPR015360 XPC-bd 267 322
No external refs found!