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  5. Cre08.g370601

Cre08.g370601


Description : Protein biosynthesis.cytosolic ribosome.small subunit (SSU).SSU processome.Mpp10 assembly factor


Gene families : OG0003625 (Archaeplastida) Phylogenetic Tree(s): OG0003625_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cre08.g370601
Cluster HCCA: Cluster_60

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00096p00039880 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.small subunit... 0.06 Archaeplastida
AT5G66540 No alias FUNCTIONS IN: molecular_function unknown; INVOLVED IN:... 0.2 Archaeplastida
Cpa|evm.model.tig00020604.12 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.05 Archaeplastida
GSVIVT01007723001 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.13 Archaeplastida
Gb_37982 No alias SSU processome assembly factor (MPP10) 0.02 Archaeplastida
LOC_Os11g04200.1 No alias SSU processome assembly factor (MPP10) 0.04 Archaeplastida
LOC_Os12g04010.1 No alias SSU processome assembly factor (MPP10) 0.03 Archaeplastida
MA_77639g0010 No alias SSU processome assembly factor (MPP10) 0.04 Archaeplastida
Mp8g00320.1 No alias SSU processome assembly factor (MPP10) 0.19 Archaeplastida
Pp3c4_31210V3.1 No alias No annotation 0.16 Archaeplastida
Smo423082 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.13 Archaeplastida
Solyc03g112820.4.1 No alias SSU processome assembly factor (MPP10) 0.18 Archaeplastida
Zm00001e032203_P002 No alias SSU processome assembly factor (MPP10) 0.16 Archaeplastida

Type GO Term Name Evidence Source
CC GO:0005634 nucleus IEA Interproscan
CC GO:0005732 small nucleolar ribonucleoprotein complex IEA Interproscan
BP GO:0006364 rRNA processing IEA Interproscan
CC GO:0034457 Mpp10 complex IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Neighborhood
BP GO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEP Neighborhood
BP GO:0001510 RNA methylation IEP Neighborhood
MF GO:0003674 molecular_function IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
MF GO:0005524 ATP binding IEP Neighborhood
CC GO:0005730 nucleolus IEP Neighborhood
BP GO:0006399 tRNA metabolic process IEP Neighborhood
BP GO:0008033 tRNA processing IEP Neighborhood
MF GO:0008134 transcription factor binding IEP Neighborhood
MF GO:0008144 drug binding IEP Neighborhood
MF GO:0008168 methyltransferase activity IEP Neighborhood
MF GO:0008175 tRNA methyltransferase activity IEP Neighborhood
BP GO:0009451 RNA modification IEP Neighborhood
MF GO:0016426 tRNA (adenine) methyltransferase activity IEP Neighborhood
MF GO:0016429 tRNA (adenine-N1-)-methyltransferase activity IEP Neighborhood
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Neighborhood
MF GO:0016779 nucleotidyltransferase activity IEP Neighborhood
MF GO:0017076 purine nucleotide binding IEP Neighborhood
MF GO:0017150 tRNA dihydrouridine synthase activity IEP Neighborhood
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Neighborhood
BP GO:0030488 tRNA methylation IEP Neighborhood
BP GO:0030490 maturation of SSU-rRNA IEP Neighborhood
MF GO:0030515 snoRNA binding IEP Neighborhood
MF GO:0030554 adenyl nucleotide binding IEP Neighborhood
CC GO:0030684 preribosome IEP Neighborhood
CC GO:0031515 tRNA (m1A) methyltransferase complex IEP Neighborhood
CC GO:0032040 small-subunit processome IEP Neighborhood
MF GO:0032553 ribonucleotide binding IEP Neighborhood
MF GO:0032555 purine ribonucleotide binding IEP Neighborhood
MF GO:0032559 adenyl ribonucleotide binding IEP Neighborhood
CC GO:0034708 methyltransferase complex IEP Neighborhood
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Neighborhood
MF GO:0036094 small molecule binding IEP Neighborhood
BP GO:0042254 ribosome biogenesis IEP Neighborhood
MF GO:0043167 ion binding IEP Neighborhood
MF GO:0043168 anion binding IEP Neighborhood
CC GO:0043228 non-membrane-bounded organelle IEP Neighborhood
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Neighborhood
CC GO:0043527 tRNA methyltransferase complex IEP Neighborhood
BP GO:0044085 cellular component biogenesis IEP Neighborhood
BP GO:0071840 cellular component organization or biogenesis IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
MF GO:0097367 carbohydrate derivative binding IEP Neighborhood
MF GO:0140098 catalytic activity, acting on RNA IEP Neighborhood
MF GO:0140101 catalytic activity, acting on a tRNA IEP Neighborhood
MF GO:1901265 nucleoside phosphate binding IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood
InterPro domains Description Start Stop
IPR012173 Mpp10 188 820
No external refs found!