AMTR_s00050p00225320 (evm_27.TU.AmTr_v1.0_sc...)

Aliases : evm_27.TU.AmTr_v1.0_scaffold00050.92

Description : RNA biosynthesis.transcriptional activation.MADS box transcription factor

Gene families : OG0015492 (Archaeplastida) Phylogenetic Tree(s): OG0015492_tree ,
OG_05_0015349 (LandPlants) Phylogenetic Tree(s): OG_05_0015349_tree ,
OG_06_0015048 (SeedPlants) Phylogenetic Tree(s): OG_06_0015048_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AMTR_s00050p00225320
Cluster	HCCA: Cluster_113

Target	Alias	Description	ECC score	Gene Family Method	Actions
AMTR_s00159p00052500	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.MADS box...	0.04	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	None	Extended
MF	GO:0046983	protein dimerization activity	IEA	Interproscan
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
MF	GO:0008168	methyltransferase activity	IEP	Neighborhood
MF	GO:0016741	transferase activity, transferring one-carbon groups	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR002100	TF_MADSbox	9	54

External Links

No external refs found!