Cre09.g408200

Description : RNA processing.RNA splicing.spliceosome-associated non-snRNP factors.RSZ21/22 splicing factor

Gene families : OG0002592 (Archaeplastida) Phylogenetic Tree(s): OG0002592_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Cre09.g408200
Cluster	HCCA: Cluster_125

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00088p00022360	evm_27.TU.AmTr_v1...	RNA processing.RNA splicing.spliceosome-associated...	0.02	Archaeplastida
AT1G23860	RSZ21, At-RSZ21,...	RS-containing zinc finger protein 21	0.06	Archaeplastida
AT2G24590	At-RSZ22a, RSZ22a	RNA recognition motif and CCHC-type zinc finger domains...	0.04	Archaeplastida
AT4G31580	RSZ22, At-RSZ22,...	serine/arginine-rich 22	0.11	Archaeplastida
GSVIVT01020220001	No alias	RNA processing.RNA splicing.spliceosome-associated...	0.04	Archaeplastida
GSVIVT01033172001	No alias	RNA processing.RNA splicing.spliceosome-associated...	0.07	Archaeplastida
Gb_16463	No alias	RSZ21/22 RNA splicing factor	0.03	Archaeplastida
Gb_20020	No alias	RSZ21/22 RNA splicing factor	0.05	Archaeplastida
MA_10435943g0010	No alias	RSZ21/22 RNA splicing factor	0.08	Archaeplastida
Pp3c7_5100V3.1	No alias	serine/arginine-rich 22	0.03	Archaeplastida
Solyc08g069120.4.1	No alias	no hits & (original description: none)	0.02	Archaeplastida
Zm00001e015077_P001	No alias	RSZ21/22 RNA splicing factor	0.03	Archaeplastida
Zm00001e016090_P001	No alias	RSZ21/22 RNA splicing factor	0.11	Archaeplastida
Zm00001e022939_P001	No alias	RSZ21/22 RNA splicing factor	0.05	Archaeplastida
Zm00001e023726_P001	No alias	RSZ21/22 RNA splicing factor	0.07	Archaeplastida
Zm00001e036288_P001	No alias	RSZ21/22 RNA splicing factor	0.03	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0008270	zinc ion binding	IEA	Interproscan
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
MF	GO:0046872	metal ion binding	None	Extended
MF	GO:0046914	transition metal ion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
BP	GO:0006397	mRNA processing	IEP	Neighborhood
BP	GO:0016071	mRNA metabolic process	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR000504	RRM_dom	5	62
IPR001878	Znf_CCHC	103	118

External Links

No external refs found!