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  5. AMTR_s00052p00103370

AMTR_s00052p00103370 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00052.30

Description : Pentatricopeptide repeat-containing protein At5g39710 OS=Arabidopsis thaliana


Gene families : OG0012842 (Archaeplastida) Phylogenetic Tree(s): OG0012842_tree ,
OG_05_0012767 (LandPlants) Phylogenetic Tree(s): OG_05_0012767_tree ,
OG_06_0010790 (SeedPlants) Phylogenetic Tree(s): OG_06_0010790_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00052p00103370
Cluster HCCA: Cluster_106

Target Alias Description ECC score Gene Family Method Actions
LOC_Os03g02762.1 No alias Pentatricopeptide repeat-containing protein At5g18390,... 0.05 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEP Neighborhood
MF GO:0004659 prenyltransferase activity IEP Neighborhood
CC GO:0005840 ribosome IEP Neighborhood
BP GO:0006412 translation IEP Neighborhood
BP GO:0009059 macromolecule biosynthetic process IEP Neighborhood
MF GO:0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups IEP Neighborhood
CC GO:0030117 membrane coat IEP Neighborhood
BP GO:0034645 cellular macromolecule biosynthetic process IEP Neighborhood
BP GO:0043043 peptide biosynthetic process IEP Neighborhood
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Neighborhood
CC GO:0044444 cytoplasmic part IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 188 230
IPR002885 Pentatricopeptide_repeat 297 325
IPR002885 Pentatricopeptide_repeat 261 288
IPR002885 Pentatricopeptide_repeat 157 182
No external refs found!