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Description : Chromatin organisation.histone modifications.histone deacetylation.HD1 histone deacetylase family.class-II histone deacetylase
Gene families : OG0001854 (Archaeplastida) Phylogenetic Tree(s): OG0001854_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: Cre11.g467785 | |
| Cluster | HCCA: Cluster_69 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| MA_10433858g0010 | No alias | Histone deacetylase 5 OS=Arabidopsis thaliana... | 0.02 | Archaeplastida |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003779 | actin binding | IEP | Neighborhood |
| MF | GO:0004190 | aspartic-type endopeptidase activity | IEP | Neighborhood |
| MF | GO:0005543 | phospholipid binding | IEP | Neighborhood |
| BP | GO:0006812 | cation transport | IEP | Neighborhood |
| BP | GO:0007010 | cytoskeleton organization | IEP | Neighborhood |
| MF | GO:0008134 | transcription factor binding | IEP | Neighborhood |
| MF | GO:0008289 | lipid binding | IEP | Neighborhood |
| MF | GO:0008324 | cation transmembrane transporter activity | IEP | Neighborhood |
| MF | GO:0008418 | protein-N-terminal asparagine amidohydrolase activity | IEP | Neighborhood |
| MF | GO:0015075 | ion transmembrane transporter activity | IEP | Neighborhood |
| MF | GO:0015318 | inorganic molecular entity transmembrane transporter activity | IEP | Neighborhood |
| MF | GO:0016810 | hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds | IEP | Neighborhood |
| MF | GO:0016811 | hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides | IEP | Neighborhood |
| MF | GO:0017025 | TBP-class protein binding | IEP | Neighborhood |
| MF | GO:0022890 | inorganic cation transmembrane transporter activity | IEP | Neighborhood |
| BP | GO:0030001 | metal ion transport | IEP | Neighborhood |
| MF | GO:0035091 | phosphatidylinositol binding | IEP | Neighborhood |
| MF | GO:0046873 | metal ion transmembrane transporter activity | IEP | Neighborhood |
| MF | GO:0070001 | aspartic-type peptidase activity | IEP | Neighborhood |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR023801 | His_deacetylse_dom | 10 | 309 |
| No external refs found! |