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  5. Cre11.g481550

Cre11.g481550


Description : RNA biosynthesis.RNA polymerase II-dependent transcription.pre-initiation complex.TFIIe basal transcription factor complex.alpha subunit


Gene families : OG0003001 (Archaeplastida) Phylogenetic Tree(s): OG0003001_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cre11.g481550
Cluster HCCA: Cluster_69

Target Alias Description ECC score Gene Family Method Actions
AT4G20340 No alias Transcription factor TFIIE, alpha subunit 0.02 Archaeplastida
MA_6906g0020 No alias subunit alpha of TFIIe basal transcription factor complex 0.02 Archaeplastida
Mp7g00540.1 No alias subunit alpha of TFIIe basal transcription factor complex 0.03 Archaeplastida
Pp3c27_3010V3.1 No alias Transcription factor TFIIE, alpha subunit 0.02 Archaeplastida
Zm00001e002837_P003 No alias no hits & (original description: none) 0.03 Archaeplastida
Zm00001e012857_P003 No alias subunit alpha of TFIIe basal transcription factor complex 0.02 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP Neighborhood
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Neighborhood
BP GO:0000398 mRNA splicing, via spliceosome IEP Neighborhood
BP GO:0001522 pseudouridine synthesis IEP Neighborhood
CC GO:0005681 spliceosomal complex IEP Neighborhood
BP GO:0006397 mRNA processing IEP Neighborhood
BP GO:0008380 RNA splicing IEP Neighborhood
MF GO:0009982 pseudouridine synthase activity IEP Neighborhood
MF GO:0016866 intramolecular transferase activity IEP Neighborhood
MF GO:0070008 serine-type exopeptidase activity IEP Neighborhood

No InterPro domains available for this sequence

No external refs found!