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  5. Cre11.g482483

Cre11.g482483


Description : RNA processing.RNA decay.exosome complex.associated co-factors.SUPERKILLER (SKI) regulation complex.SKI2 RNA helicase component


Gene families : OG0000933 (Archaeplastida) Phylogenetic Tree(s): OG0000933_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cre11.g482483
Cluster HCCA: Cluster_134

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00025p00200390 evm_27.TU.AmTr_v1... RNA processing.RNA decay.exosome complex.associated... 0.02 Archaeplastida
AMTR_s00029p00206820 evm_27.TU.AmTr_v1... RNA processing.RNA decay.exosome complex.associated... 0.02 Archaeplastida
GSVIVT01024809001 No alias RNA processing.RNA decay.exosome complex.associated... 0.03 Archaeplastida
GSVIVT01037437001 No alias RNA processing.RNA decay.exosome complex.associated... 0.01 Archaeplastida
LOC_Os02g06500.1 No alias RNA helicase component SKI2 of SUPERKILLER (SKI)... 0.05 Archaeplastida
MA_10426385g0010 No alias DExH-box ATP-dependent RNA helicase DExH10... 0.02 Archaeplastida
MA_10437134g0010 No alias DExH-box ATP-dependent RNA helicase DExH11... 0.01 Archaeplastida
Mp1g05510.1 No alias RNA helicase component SKI2 of SUPERKILLER (SKI)... 0.04 Archaeplastida
Pp3c10_7310V3.1 No alias RNA helicase, ATP-dependent, SK12/DOB1 protein 0.02 Archaeplastida
Pp3c20_11040V3.1 No alias RNA helicase, ATP-dependent, SK12/DOB1 protein 0.04 Archaeplastida
Smo403447 No alias RNA processing.RNA decay.exosome complex.associated... 0.01 Archaeplastida
Smo79650 No alias RNA processing.RNA decay.exosome complex.associated... 0.02 Archaeplastida
Solyc01g103080.3.1 No alias RNA helicase component MTR4/HEN2 of Nuclear Exosome... 0.03 Archaeplastida
Solyc06g005990.4.1 No alias DExH-box ATP-dependent RNA helicase DExH11... 0.03 Archaeplastida
Solyc12g017860.3.1 No alias RNA helicase component MTR4/HEN2 of Nuclear Exosome... 0.02 Archaeplastida
Zm00001e013693_P002 No alias RNA helicase component SKI2 of SUPERKILLER (SKI)... 0.03 Archaeplastida
Zm00001e025923_P001 No alias RNA helicase component MTR4/HEN2 of Nuclear Exosome... 0.02 Archaeplastida
Zm00001e036710_P004 No alias RNA helicase component MTR4/HEN2 of Nuclear Exosome... 0.01 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000145 exocyst IEP Neighborhood
BP GO:0000723 telomere maintenance IEP Neighborhood
MF GO:0003684 damaged DNA binding IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
CC GO:0005643 nuclear pore IEP Neighborhood
BP GO:0006259 DNA metabolic process IEP Neighborhood
BP GO:0006281 DNA repair IEP Neighborhood
BP GO:0006367 transcription initiation from RNA polymerase II promoter IEP Neighborhood
BP GO:0006904 vesicle docking involved in exocytosis IEP Neighborhood
BP GO:0006950 response to stress IEP Neighborhood
BP GO:0006974 cellular response to DNA damage stimulus IEP Neighborhood
MF GO:0008234 cysteine-type peptidase activity IEP Neighborhood
BP GO:0009890 negative regulation of biosynthetic process IEP Neighborhood
BP GO:0010558 negative regulation of macromolecule biosynthetic process IEP Neighborhood
BP GO:0010629 negative regulation of gene expression IEP Neighborhood
BP GO:0016579 protein deubiquitination IEP Neighborhood
MF GO:0019783 ubiquitin-like protein-specific protease activity IEP Neighborhood
BP GO:0022406 membrane docking IEP Neighborhood
BP GO:0031324 negative regulation of cellular metabolic process IEP Neighborhood
BP GO:0031327 negative regulation of cellular biosynthetic process IEP Neighborhood
BP GO:0032200 telomere organization IEP Neighborhood
BP GO:0033554 cellular response to stress IEP Neighborhood
MF GO:0036459 thiol-dependent ubiquitinyl hydrolase activity IEP Neighborhood
CC GO:0044448 cell cortex part IEP Neighborhood
BP GO:0045892 negative regulation of transcription, DNA-templated IEP Neighborhood
BP GO:0045934 negative regulation of nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0048278 vesicle docking IEP Neighborhood
BP GO:0048523 negative regulation of cellular process IEP Neighborhood
BP GO:0050896 response to stimulus IEP Neighborhood
BP GO:0051172 negative regulation of nitrogen compound metabolic process IEP Neighborhood
BP GO:0051253 negative regulation of RNA metabolic process IEP Neighborhood
BP GO:0051640 organelle localization IEP Neighborhood
BP GO:0051716 cellular response to stimulus IEP Neighborhood
BP GO:0060249 anatomical structure homeostasis IEP Neighborhood
BP GO:0070646 protein modification by small protein removal IEP Neighborhood
BP GO:0070647 protein modification by small protein conjugation or removal IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
MF GO:0101005 ubiquitinyl hydrolase activity IEP Neighborhood
BP GO:0140029 exocytic process IEP Neighborhood
BP GO:0140056 organelle localization by membrane tethering IEP Neighborhood
BP GO:1902679 negative regulation of RNA biosynthetic process IEP Neighborhood
BP GO:1903507 negative regulation of nucleic acid-templated transcription IEP Neighborhood
BP GO:2000113 negative regulation of cellular macromolecule biosynthetic process IEP Neighborhood
InterPro domains Description Start Stop
IPR025696 rRNA_proc-arch_dom 982 1073
IPR025696 rRNA_proc-arch_dom 1243 1327
IPR012961 Ski2_C 1354 1525
IPR011545 DEAD/DEAH_box_helicase_dom 475 619
No external refs found!