1. Home
  2. Species
  3. Chlamydomonas reinhardtii
  4. Sequence
  5. Cre12.g505200

Cre12.g505200


Description : DEAD-box ATP-dependent RNA helicase 10 OS=Oryza sativa subsp. japonica


Gene families : OG0000758 (Archaeplastida) Phylogenetic Tree(s): OG0000758_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cre12.g505200
Cluster HCCA: Cluster_118

Target Alias Description ECC score Gene Family Method Actions
AT1G16280 AtRH36, SWA3, RH36 RNA helicase 36 0.08 Archaeplastida
AT4G16630 No alias DEA(D/H)-box RNA helicase family protein 0.03 Archaeplastida
Cpa|evm.model.tig00000792.35 No alias DEAD-box ATP-dependent RNA helicase 28 OS=Oryza sativa... 0.05 Archaeplastida
Cpa|evm.model.tig00020848.20 No alias DEAD-box ATP-dependent RNA helicase 10 OS=Arabidopsis thaliana 0.09 Archaeplastida
Cpa|evm.model.tig00021122.18 No alias DEAD-box ATP-dependent RNA helicase 36 OS=Arabidopsis thaliana 0.02 Archaeplastida
GSVIVT01009935001 No alias DEAD-box ATP-dependent RNA helicase 28 OS=Oryza sativa... 0.06 Archaeplastida
Gb_16576 No alias DEAD-box ATP-dependent RNA helicase 28 OS=Oryza sativa... 0.02 Archaeplastida
Gb_23737 No alias SSU processome assembly factor (SWA3) 0.03 Archaeplastida
LOC_Os03g46610.1 No alias DEAD-box ATP-dependent RNA helicase 10 OS=Oryza sativa... 0.03 Archaeplastida
LOC_Os07g43980.1 No alias SSU processome assembly factor (SWA3) 0.04 Archaeplastida
LOC_Os12g29660.1 No alias DEAD-box ATP-dependent RNA helicase 28 OS=Oryza sativa... 0.03 Archaeplastida
Mp1g19410.1 No alias SSU processome assembly factor (SWA3) 0.03 Archaeplastida
Mp4g20180.1 No alias DEAD-box ATP-dependent RNA helicase 10 OS=Arabidopsis... 0.04 Archaeplastida
Mp4g21330.1 No alias DEAD-box ATP-dependent RNA helicase 28 OS=Oryza sativa... 0.06 Archaeplastida
Pp3c16_16520V3.1 No alias RNA helicase 36 0.07 Archaeplastida
Pp3c1_37280V3.1 No alias DEA(D/H)-box RNA helicase family protein 0.02 Archaeplastida
Pp3c9_14310V3.1 No alias DEA(D/H)-box RNA helicase family protein 0.04 Archaeplastida
Solyc04g081580.4.1 No alias DEAD-box ATP-dependent RNA helicase 28 OS=Arabidopsis... 0.05 Archaeplastida
Solyc10g005520.3.1 No alias SSU processome assembly factor (SWA3) 0.02 Archaeplastida
Solyc10g007550.3.1 No alias DEAD-box ATP-dependent RNA helicase 10 OS=Arabidopsis... 0.02 Archaeplastida
Zm00001e010143_P002 No alias DEAD-box ATP-dependent RNA helicase 28 OS=Oryza sativa... 0.04 Archaeplastida
Zm00001e013281_P004 No alias DEAD-box ATP-dependent RNA helicase 10 OS=Oryza sativa... 0.03 Archaeplastida
Zm00001e034676_P001 No alias DEAD-box ATP-dependent RNA helicase 28 OS=Oryza sativa... 0.02 Archaeplastida
Zm00001e035639_P002 No alias SSU processome assembly factor (SWA3) 0.04 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000469 cleavage involved in rRNA processing IEP Neighborhood
MF GO:0001882 nucleoside binding IEP Neighborhood
MF GO:0001883 purine nucleoside binding IEP Neighborhood
MF GO:0003937 IMP cyclohydrolase activity IEP Neighborhood
MF GO:0004643 phosphoribosylaminoimidazolecarboxamide formyltransferase activity IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
MF GO:0005525 GTP binding IEP Neighborhood
BP GO:0006139 nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0006351 transcription, DNA-templated IEP Neighborhood
BP GO:0006364 rRNA processing IEP Neighborhood
BP GO:0006396 RNA processing IEP Neighborhood
BP GO:0006725 cellular aromatic compound metabolic process IEP Neighborhood
BP GO:0006807 nitrogen compound metabolic process IEP Neighborhood
MF GO:0008252 nucleotidase activity IEP Neighborhood
MF GO:0008253 5'-nucleotidase activity IEP Neighborhood
BP GO:0008612 peptidyl-lysine modification to peptidyl-hypusine IEP Neighborhood
BP GO:0009058 biosynthetic process IEP Neighborhood
BP GO:0009116 nucleoside metabolic process IEP Neighborhood
BP GO:0009166 nucleotide catabolic process IEP Neighborhood
BP GO:0009262 deoxyribonucleotide metabolic process IEP Neighborhood
BP GO:0009264 deoxyribonucleotide catabolic process IEP Neighborhood
BP GO:0009987 cellular process IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
BP GO:0016072 rRNA metabolic process IEP Neighborhood
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Neighborhood
MF GO:0016742 hydroxymethyl-, formyl- and related transferase activity IEP Neighborhood
MF GO:0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds IEP Neighborhood
MF GO:0016814 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines IEP Neighborhood
BP GO:0018130 heterocycle biosynthetic process IEP Neighborhood
BP GO:0018205 peptidyl-lysine modification IEP Neighborhood
MF GO:0019001 guanyl nucleotide binding IEP Neighborhood
MF GO:0019238 cyclohydrolase activity IEP Neighborhood
BP GO:0019438 aromatic compound biosynthetic process IEP Neighborhood
MF GO:0032549 ribonucleoside binding IEP Neighborhood
MF GO:0032550 purine ribonucleoside binding IEP Neighborhood
MF GO:0032561 guanyl ribonucleotide binding IEP Neighborhood
BP GO:0032774 RNA biosynthetic process IEP Neighborhood
BP GO:0034470 ncRNA processing IEP Neighborhood
BP GO:0034641 cellular nitrogen compound metabolic process IEP Neighborhood
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP Neighborhood
BP GO:0034660 ncRNA metabolic process IEP Neighborhood
BP GO:0044237 cellular metabolic process IEP Neighborhood
BP GO:0044238 primary metabolic process IEP Neighborhood
BP GO:0044249 cellular biosynthetic process IEP Neighborhood
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Neighborhood
BP GO:0044281 small molecule metabolic process IEP Neighborhood
BP GO:0046483 heterocycle metabolic process IEP Neighborhood
BP GO:0051604 protein maturation IEP Neighborhood
BP GO:0055086 nucleobase-containing small molecule metabolic process IEP Neighborhood
BP GO:0071704 organic substance metabolic process IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
BP GO:0090305 nucleic acid phosphodiester bond hydrolysis IEP Neighborhood
BP GO:0090501 RNA phosphodiester bond hydrolysis IEP Neighborhood
BP GO:0097659 nucleic acid-templated transcription IEP Neighborhood
BP GO:1901135 carbohydrate derivative metabolic process IEP Neighborhood
BP GO:1901136 carbohydrate derivative catabolic process IEP Neighborhood
BP GO:1901360 organic cyclic compound metabolic process IEP Neighborhood
BP GO:1901362 organic cyclic compound biosynthetic process IEP Neighborhood
BP GO:1901576 organic substance biosynthetic process IEP Neighborhood
BP GO:1901657 glycosyl compound metabolic process IEP Neighborhood
InterPro domains Description Start Stop
IPR001650 Helicase_C 248 351
IPR011545 DEAD/DEAH_box_helicase_dom 42 208
No external refs found!