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  5. Cre12.g518107

Cre12.g518107


Description : RNA biosynthesis.RNA polymerase III-dependent transcription.TFIIIc transcription factor complex.TFC3 promotor-binding component


Gene families : OG0001366 (Archaeplastida) Phylogenetic Tree(s): OG0001366_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cre12.g518107
Cluster HCCA: Cluster_48

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00011p00218290 evm_27.TU.AmTr_v1... RNA biosynthesis.RNA polymerase III-dependent... 0.03 Archaeplastida
AMTR_s00029p00113670 evm_27.TU.AmTr_v1... RNA biosynthesis.RNA polymerase III-dependent... 0.02 Archaeplastida
AT1G17450 No alias B-block binding subunit of TFIIIC 0.03 Archaeplastida
AT1G59460 No alias No description available 0.01 Archaeplastida
Gb_30476 No alias promotor-binding component TFC3 of TFIIIc transcription... 0.05 Archaeplastida
Gb_37452 No alias promotor-binding component TFC3 of TFIIIc transcription... 0.02 Archaeplastida
LOC_Os02g21190.1 No alias promotor-binding component TFC3 of TFIIIc transcription... 0.01 Archaeplastida
LOC_Os02g42200.1 No alias promotor-binding component TFC3 of TFIIIc transcription... 0.02 Archaeplastida
MA_59941g0010 No alias promotor-binding component TFC3 of TFIIIc transcription... 0.03 Archaeplastida
MA_60759g0010 No alias promotor-binding component TFC3 of TFIIIc transcription... 0.02 Archaeplastida
Mp1g26830.1 No alias promotor-binding component TFC3 of TFIIIc transcription... 0.04 Archaeplastida
Pp3c4_16500V3.1 No alias B-block binding subunit of TFIIIC 0.05 Archaeplastida
Smo409587 No alias RNA biosynthesis.RNA polymerase III-dependent... 0.02 Archaeplastida
Solyc09g009800.3.1 No alias promotor-binding component TFC3 of TFIIIc transcription... 0.04 Archaeplastida
Zm00001e015835_P001 No alias promotor-binding component TFC3 of TFIIIc transcription... 0.01 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay IEP Neighborhood
BP GO:0000956 nuclear-transcribed mRNA catabolic process IEP Neighborhood
MF GO:0003700 DNA-binding transcription factor activity IEP Neighborhood
MF GO:0003887 DNA-directed DNA polymerase activity IEP Neighborhood
MF GO:0004672 protein kinase activity IEP Neighborhood
MF GO:0004674 protein serine/threonine kinase activity IEP Neighborhood
MF GO:0004842 ubiquitin-protein transferase activity IEP Neighborhood
MF GO:0005096 GTPase activator activity IEP Neighborhood
BP GO:0006401 RNA catabolic process IEP Neighborhood
BP GO:0006402 mRNA catabolic process IEP Neighborhood
BP GO:0006468 protein phosphorylation IEP Neighborhood
BP GO:0006793 phosphorus metabolic process IEP Neighborhood
BP GO:0006796 phosphate-containing compound metabolic process IEP Neighborhood
BP GO:0010468 regulation of gene expression IEP Neighborhood
BP GO:0010629 negative regulation of gene expression IEP Neighborhood
MF GO:0016301 kinase activity IEP Neighborhood
MF GO:0016307 phosphatidylinositol phosphate kinase activity IEP Neighborhood
BP GO:0016310 phosphorylation IEP Neighborhood
MF GO:0016740 transferase activity IEP Neighborhood
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP Neighborhood
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP Neighborhood
BP GO:0019222 regulation of metabolic process IEP Neighborhood
MF GO:0019787 ubiquitin-like protein transferase activity IEP Neighborhood
CC GO:0035658 Mon1-Ccz1 complex IEP Neighborhood
CC GO:0044440 endosomal part IEP Neighborhood
BP GO:0060255 regulation of macromolecule metabolic process IEP Neighborhood
MF GO:0140096 catalytic activity, acting on a protein IEP Neighborhood
MF GO:0140110 transcription regulator activity IEP Neighborhood
InterPro domains Description Start Stop
IPR007309 TFIIIC_Bblock-bd 141 211
No external refs found!