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  5. AMTR_s00054p00036880

AMTR_s00054p00036880 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00054.9

Description : RNA biosynthesis.RNA polymerase II-dependent transcription.pre-initiation complex.TATA box-binding protein (TBP) regulation.NC2 regulator complex.alpha component


Gene families : OG0002760 (Archaeplastida) Phylogenetic Tree(s): OG0002760_tree ,
OG_05_0003031 (LandPlants) Phylogenetic Tree(s): OG_05_0003031_tree ,
OG_06_0002988 (SeedPlants) Phylogenetic Tree(s): OG_06_0002988_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00054p00036880
Cluster HCCA: Cluster_344

Target Alias Description ECC score Gene Family Method Actions
Mp1g16880.1 No alias component alpha of TATA box-binding protein NC2 regulator complex 0.01 Archaeplastida
Solyc11g072150.3.1 No alias component alpha of TATA box-binding protein NC2 regulator complex 0.02 Archaeplastida
Zm00001e024182_P002 No alias component alpha of TATA box-binding protein NC2 regulator complex 0.04 Archaeplastida

Type GO Term Name Evidence Source
CC GO:0005622 intracellular IEA Interproscan
MF GO:0043565 sequence-specific DNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004252 serine-type endopeptidase activity IEP Neighborhood
MF GO:0008236 serine-type peptidase activity IEP Neighborhood
MF GO:0017171 serine hydrolase activity IEP Neighborhood
InterPro domains Description Start Stop
IPR003958 CBFA_NFYB_domain 8 71
No external refs found!