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  5. Cre12.g553100

Cre12.g553100


Description : Varicose-related protein OS=Arabidopsis thaliana


Gene families : OG0001664 (Archaeplastida) Phylogenetic Tree(s): OG0001664_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cre12.g553100
Cluster HCCA: Cluster_125

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00061p00131900 evm_27.TU.AmTr_v1... RNA processing.RNA decay.deadenylation-dependent... 0.02 Archaeplastida
AT3G13300 VCS Transducin/WD40 repeat-like superfamily protein 0.02 Archaeplastida
LOC_Os02g49090.1 No alias scaffold component VCS of mRNA decapping complex 0.02 Archaeplastida
LOC_Os06g19660.1 No alias scaffold component VCS of mRNA decapping complex 0.02 Archaeplastida
MA_10431534g0010 No alias Varicose-related protein OS=Arabidopsis thaliana... 0.02 Archaeplastida
MA_10431534g0020 No alias Enhancer of mRNA-decapping protein 4 OS=Arabidopsis... 0.03 Archaeplastida
Pp3c3_2660V3.1 No alias Transducin/WD40 repeat-like superfamily protein 0.02 Archaeplastida
Zm00001e015689_P001 No alias scaffold component VCS of mRNA decapping complex 0.02 Archaeplastida
Zm00001e023399_P003 No alias scaffold component VCS of mRNA decapping complex 0.03 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000726 non-recombinational repair IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0005198 structural molecule activity IEP Neighborhood
CC GO:0005643 nuclear pore IEP Neighborhood
CC GO:0005801 cis-Golgi network IEP Neighborhood
BP GO:0006302 double-strand break repair IEP Neighborhood
BP GO:0006303 double-strand break repair via nonhomologous end joining IEP Neighborhood
BP GO:0006397 mRNA processing IEP Neighborhood
BP GO:0006913 nucleocytoplasmic transport IEP Neighborhood
BP GO:0016579 protein deubiquitination IEP Neighborhood
MF GO:0017056 structural constituent of nuclear pore IEP Neighborhood
CC GO:0043227 membrane-bounded organelle IEP Neighborhood
CC GO:0043231 intracellular membrane-bounded organelle IEP Neighborhood
CC GO:0044422 organelle part IEP Neighborhood
CC GO:0044424 intracellular part IEP Neighborhood
CC GO:0044428 nuclear part IEP Neighborhood
CC GO:0044431 Golgi apparatus part IEP Neighborhood
CC GO:0044446 intracellular organelle part IEP Neighborhood
CC GO:0044464 cell part IEP Neighborhood
BP GO:0046907 intracellular transport IEP Neighborhood
BP GO:0051169 nuclear transport IEP Neighborhood
BP GO:0051641 cellular localization IEP Neighborhood
BP GO:0051649 establishment of localization in cell IEP Neighborhood
BP GO:0070646 protein modification by small protein removal IEP Neighborhood
InterPro domains Description Start Stop
IPR032401 EDC4_WD40 120 204
No external refs found!