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  5. Cre13.g567450

Cre13.g567450


Description : Chromatin organisation.histones.H1 linker histone


Gene families : OG0000491 (Archaeplastida) Phylogenetic Tree(s): OG0000491_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cre13.g567450
Cluster HCCA: Cluster_40

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00002p00264270 evm_27.TU.AmTr_v1... Chromatin organisation.histones.H1 linker histone 0.06 Archaeplastida
AMTR_s00057p00112340 evm_27.TU.AmTr_v1... Chromatin organisation.histones.H1 linker histone 0.05 Archaeplastida
AMTR_s00185p00055680 evm_27.TU.AmTr_v1... Chromatin organisation.histones.H1 linker histone 0.03 Archaeplastida
AT1G06760 No alias winged-helix DNA-binding transcription factor family protein 0.18 Archaeplastida
AT2G30620 No alias winged-helix DNA-binding transcription factor family protein 0.05 Archaeplastida
Cpa|evm.model.tig00020780.71 No alias No description available 0.01 Archaeplastida
GSVIVT01018114001 No alias Chromatin organisation.histones.H1 linker histone 0.02 Archaeplastida
GSVIVT01028074001 No alias Chromatin organisation.histones.H1 linker histone 0.08 Archaeplastida
Gb_02738 No alias linker histone (H1) 0.27 Archaeplastida
Gb_03348 No alias linker histone (H1) 0.14 Archaeplastida
LOC_Os04g18090.1 No alias linker histone (H1) 0.33 Archaeplastida
LOC_Os07g08710.1 No alias linker histone (H1) 0.11 Archaeplastida
MA_102457g0010 No alias linker histone (H1) 0.12 Archaeplastida
MA_10428525g0020 No alias linker histone (H1) 0.04 Archaeplastida
MA_10436125g0010 No alias linker histone (H1) 0.05 Archaeplastida
MA_10436125g0020 No alias linker histone (H1) 0.05 Archaeplastida
MA_11137g0010 No alias no hits & (original description: none) 0.02 Archaeplastida
MA_11231g0010 No alias no hits & (original description: none) 0.02 Archaeplastida
MA_500183g0010 No alias linker histone (H1) 0.16 Archaeplastida
MA_5293931g0010 No alias No annotation 0.07 Archaeplastida
MA_6021364g0010 No alias linker histone (H1) 0.11 Archaeplastida
MA_6251451g0010 No alias No annotation 0.07 Archaeplastida
Mp6g03150.1 No alias linker histone (H1) 0.2 Archaeplastida
Pp3c18_14270V3.1 No alias winged-helix DNA-binding transcription factor family protein 0.02 Archaeplastida
Pp3c18_19330V3.1 No alias winged-helix DNA-binding transcription factor family protein 0.07 Archaeplastida
Solyc09g066100.3.1 No alias linker histone (H1) 0.14 Archaeplastida
Solyc09g083380.4.1 No alias linker histone (H1) 0.21 Archaeplastida
Zm00001e006018_P006 No alias linker histone (H1) 0.07 Archaeplastida
Zm00001e007189_P001 No alias linker histone (H1) 0.21 Archaeplastida
Zm00001e011857_P001 No alias linker histone (H1) 0.08 Archaeplastida
Zm00001e011859_P001 No alias linker histone (H1) 0.18 Archaeplastida
Zm00001e032965_P005 No alias linker histone (H1) 0.01 Archaeplastida

Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEA Interproscan
MF GO:0003677 DNA binding IEA Interproscan
CC GO:0005634 nucleus IEA Interproscan
BP GO:0006334 nucleosome assembly IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR005818 Histone_H1/H5_H15 47 115
No external refs found!