Cre13.g567700

Description : Chromatin organisation.histones.H2A-type histone

Gene families : OG0001575 (Archaeplastida) Phylogenetic Tree(s): OG0001575_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Cre13.g567700
Cluster	HCCA: Cluster_86

Target	Alias	Description	ECC score	Gene Family Method
AT1G52740	HTA9	histone H2A protein 9	0.02	Archaeplastida
AT3G54560	HTA11	histone H2A 11	0.03	Archaeplastida
GSVIVT01003139001	No alias	Chromatin organisation.histones.H2A-type histone	0.03	Archaeplastida
GSVIVT01017218001	No alias	Chromatin organisation.histones.H2A-type histone	0.03	Archaeplastida
Gb_04984	No alias	histone (H2A)	0.05	Archaeplastida
LOC_Os03g06670.1	No alias	histone (H2A)	0.01	Archaeplastida
LOC_Os10g28230.1	No alias	histone (H2A)	0.04	Archaeplastida
MA_100300g0010	No alias	histone (H2A)	0.02	Archaeplastida
Mp1g09020.1	No alias	histone (H2A)	0.02	Archaeplastida
Solyc06g084090.4.1	No alias	histone (H2A)	0.02	Archaeplastida
Solyc09g065755.1.1	No alias	histone (H2A)	0.02	Archaeplastida
Zm00001e005636_P001	No alias	histone (H2A)	0.05	Archaeplastida

Type	GO Term	Name	Evidence	Source
CC	GO:0000786	nucleosome	IEA	Interproscan
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
CC	GO:0032993	protein-DNA complex	None	Extended
CC	GO:0044422	organelle part	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044427	chromosomal part	None	Extended
CC	GO:0044446	intracellular organelle part	None	Extended
CC	GO:0044464	cell part	None	Extended
CC	GO:0044815	DNA packaging complex	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
CC	GO:0000151	ubiquitin ligase complex	IEP	Neighborhood
CC	GO:0000152	nuclear ubiquitin ligase complex	IEP	Neighborhood
CC	GO:0005680	anaphase-promoting complex	IEP	Neighborhood
MF	GO:0016538	cyclin-dependent protein serine/threonine kinase regulator activity	IEP	Neighborhood
MF	GO:0019207	kinase regulator activity	IEP	Neighborhood
MF	GO:0019887	protein kinase regulator activity	IEP	Neighborhood
MF	GO:0030234	enzyme regulator activity	IEP	Neighborhood
CC	GO:0031461	cullin-RING ubiquitin ligase complex	IEP	Neighborhood
CC	GO:0044428	nuclear part	IEP	Neighborhood
MF	GO:0098772	molecular function regulator	IEP	Neighborhood
CC	GO:1990234	transferase complex	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR007125	Histone_H2A/H2B/H3	23	106
IPR032454	Histone_H2A_C	107	138

External Links

No external refs found!