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  5. Cre13.g570100

Cre13.g570100


Description : Chromatin organisation.histones.H2A-type histone


Gene families : OG0000174 (Archaeplastida) Phylogenetic Tree(s): OG0000174_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cre13.g570100
Cluster HCCA: Cluster_40

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00055p00221900 evm_27.TU.AmTr_v1... Chromatin organisation.histones.H2A-type histone 0.06 Archaeplastida
AMTR_s00057p00215390 evm_27.TU.AmTr_v1... Chromatin organisation.histones.H2A-type histone 0.04 Archaeplastida
AMTR_s00058p00158560 evm_27.TU.AmTr_v1... Chromatin organisation.histones.H2A-type histone 0.07 Archaeplastida
AMTR_s00115p00128810 evm_27.TU.AmTr_v1... Chromatin organisation.histones.H2A-type histone 0.11 Archaeplastida
AMTR_s00168p00048800 evm_27.TU.AmTr_v1... Chromatin organisation.histones.H2A-type histone 0.03 Archaeplastida
AT1G08880 GAMMA-H2AX,... Histone superfamily protein 0.25 Archaeplastida
AT1G51060 HTA10 histone H2A 10 0.05 Archaeplastida
AT1G54690 GAMMA-H2AX,... gamma histone variant H2AX 0.07 Archaeplastida
AT3G20670 HTA13 histone H2A 13 0.04 Archaeplastida
AT4G27230 HTA2 histone H2A 2 0.08 Archaeplastida
AT5G27670 HTA7 histone H2A 7 0.06 Archaeplastida
AT5G59870 HTA6 histone H2A 6 0.04 Archaeplastida
Cre13.g590800 No alias Chromatin organisation.histones.H2A-type histone 0.07 Archaeplastida
Cre13.g591150 No alias Chromatin organisation.histones.H2A-type histone 0.08 Archaeplastida
GSVIVT01002735001 No alias Chromatin organisation.histones.H2A-type histone 0.01 Archaeplastida
GSVIVT01002746001 No alias Chromatin organisation.histones.H2A-type histone 0.02 Archaeplastida
GSVIVT01011034001 No alias Chromatin organisation.histones.H2A-type histone 0.1 Archaeplastida
GSVIVT01014580001 No alias Chromatin organisation.histones.H2A-type histone 0.13 Archaeplastida
GSVIVT01025019001 No alias Chromatin organisation.histones.H2A-type histone 0.02 Archaeplastida
GSVIVT01031123001 No alias Chromatin organisation.histones.H2A-type histone 0.07 Archaeplastida
Gb_06384 No alias histone (H2A) 0.2 Archaeplastida
Gb_07070 No alias histone (H2A) 0.15 Archaeplastida
Gb_12570 No alias histone (H2A) 0.05 Archaeplastida
Gb_25326 No alias histone (H2A) 0.09 Archaeplastida
Gb_29778 No alias histone (H2A) 0.04 Archaeplastida
Gb_34906 No alias histone (H2A) 0.03 Archaeplastida
Gb_37579 No alias histone (H2A) 0.07 Archaeplastida
Gb_39944 No alias histone (H2A) 0.04 Archaeplastida
LOC_Os01g31800.1 No alias histone (H2A) 0.01 Archaeplastida
LOC_Os03g17100.1 No alias histone (H2A) 0.05 Archaeplastida
LOC_Os05g02300.1 No alias histone (H2A) 0.1 Archaeplastida
LOC_Os05g38640.1 No alias histone (H2A) 0.03 Archaeplastida
LOC_Os07g36130.1 No alias histone (H2A) 0.06 Archaeplastida
LOC_Os07g36140.1 No alias histone (H2A) 0.09 Archaeplastida
LOC_Os08g33100.1 No alias histone (H2A) 0.16 Archaeplastida
LOC_Os12g25120.1 No alias histone (H2A) 0.06 Archaeplastida
MA_10425800g0010 No alias histone (H2A) 0.03 Archaeplastida
MA_10426943g0010 No alias histone (H2A) 0.07 Archaeplastida
MA_169054g0020 No alias histone (H2A) 0.15 Archaeplastida
MA_213048g0010 No alias histone (H2A) 0.09 Archaeplastida
MA_22203g0020 No alias histone (H2A) 0.08 Archaeplastida
MA_427046g0010 No alias histone (H2A) 0.08 Archaeplastida
MA_7320190g0010 No alias histone (H2A) 0.04 Archaeplastida
MA_74667g0010 No alias histone (H2A) 0.04 Archaeplastida
MA_962778g0010 No alias histone (H2A) 0.1 Archaeplastida
Mp2g00760.1 No alias histone (H2A) 0.03 Archaeplastida
Mp3g00840.1 No alias histone (H2A) 0.05 Archaeplastida
Mp3g02370.1 No alias histone (H2A) 0.02 Archaeplastida
Pp3c5_1791V3.1 No alias histone H2A 10 0.05 Archaeplastida
Pp3c5_1800V3.1 No alias histone H2A 10 0.06 Archaeplastida
Pp3c6_29410V3.1 No alias histone H2A 10 0.05 Archaeplastida
Smo166626 No alias Chromatin organisation.histones.H2A-type histone 0.03 Archaeplastida
Smo170948 No alias Chromatin organisation.histones.H2A-type histone 0.03 Archaeplastida
Smo73637 No alias Chromatin organisation.histones.H2A-type histone 0.03 Archaeplastida
Smo76653 No alias Chromatin organisation.histones.H2A-type histone 0.02 Archaeplastida
Solyc01g099410.3.1 No alias histone (H2A) 0.05 Archaeplastida
Solyc03g005220.4.1 No alias histone (H2A) 0.06 Archaeplastida
Solyc06g084430.4.1 No alias histone (H2A) 0.21 Archaeplastida
Solyc09g010400.3.1 No alias histone (H2A) 0.08 Archaeplastida
Solyc09g074300.1.1 No alias histone (H2A) 0.19 Archaeplastida
Solyc09g082710.3.1 No alias histone (H2A) 0.03 Archaeplastida
Solyc10g006560.4.1 No alias histone (H2A) 0.09 Archaeplastida
Solyc11g073250.2.1 No alias histone (H2A) 0.08 Archaeplastida
Solyc11g073260.2.1 No alias histone (H2A) 0.05 Archaeplastida
Solyc12g005270.2.1 No alias histone (H2A) 0.21 Archaeplastida
Zm00001e010232_P001 No alias histone (H2A) 0.09 Archaeplastida
Zm00001e010515_P001 No alias histone (H2A) 0.1 Archaeplastida
Zm00001e010516_P001 No alias histone (H2A) 0.05 Archaeplastida
Zm00001e011643_P001 No alias histone (H2A) 0.04 Archaeplastida
Zm00001e012144_P001 No alias histone (H2A) 0.1 Archaeplastida
Zm00001e020483_P001 No alias histone (H2A) 0.03 Archaeplastida
Zm00001e033014_P001 No alias histone (H2A) 0.03 Archaeplastida
Zm00001e034815_P001 No alias histone (H2A) 0.08 Archaeplastida
Zm00001e035183_P002 No alias histone (H2A) 0.12 Archaeplastida
Zm00001e038465_P002 No alias histone (H2A) 0.07 Archaeplastida
Zm00001e039735_P001 No alias histone (H2A) 0.03 Archaeplastida

Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEA Interproscan
MF GO:0003677 DNA binding IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR007125 Histone_H2A/H2B/H3 9 88
IPR032454 Histone_H2A_C 91 124
No external refs found!