Description : RNA biosynthesis.DNA-dependent RNA polymerase (Pol) complexes.regulatory subunits.subunit 10
Gene families : OG0004209 (Archaeplastida) Phylogenetic Tree(s): OG0004209_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | HRR: Cre13.g571650 | |
Cluster | HCCA: Cluster_118 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
AT1G11475 | NRPB10, NRPD10, NRPE10 | RNA polymerases N / 8 kDa subunit | 0.02 | Archaeplastida | |
Cpa|evm.model.tig00020554.23 | No alias | RNA biosynthesis.DNA-dependent RNA polymerase (Pol)... | 0.03 | Archaeplastida | |
LOC_Os12g07980.1 | No alias | subunit 10 of RNA polymerase | 0.02 | Archaeplastida | |
MA_51457g0010 | No alias | no hits & (original description: none) | 0.02 | Archaeplastida | |
Mp4g16650.1 | No alias | subunit 10 of RNA polymerase | 0.02 | Archaeplastida |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003677 | DNA binding | IEA | Interproscan |
MF | GO:0003899 | DNA-directed 5'-3' RNA polymerase activity | IEA | Interproscan |
BP | GO:0006351 | transcription, DNA-templated | IEA | Interproscan |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
CC | GO:0000178 | exosome (RNase complex) | IEP | Neighborhood |
MF | GO:0000287 | magnesium ion binding | IEP | Neighborhood |
MF | GO:0003723 | RNA binding | IEP | Neighborhood |
MF | GO:0003883 | CTP synthase activity | IEP | Neighborhood |
MF | GO:0004590 | orotidine-5'-phosphate decarboxylase activity | IEP | Neighborhood |
BP | GO:0006206 | pyrimidine nucleobase metabolic process | IEP | Neighborhood |
BP | GO:0006207 | 'de novo' pyrimidine nucleobase biosynthetic process | IEP | Neighborhood |
BP | GO:0006220 | pyrimidine nucleotide metabolic process | IEP | Neighborhood |
BP | GO:0006221 | pyrimidine nucleotide biosynthetic process | IEP | Neighborhood |
BP | GO:0006396 | RNA processing | IEP | Neighborhood |
BP | GO:0006400 | tRNA modification | IEP | Neighborhood |
MF | GO:0008168 | methyltransferase activity | IEP | Neighborhood |
MF | GO:0008173 | RNA methyltransferase activity | IEP | Neighborhood |
MF | GO:0008192 | RNA guanylyltransferase activity | IEP | Neighborhood |
MF | GO:0008193 | tRNA guanylyltransferase activity | IEP | Neighborhood |
MF | GO:0008270 | zinc ion binding | IEP | Neighborhood |
BP | GO:0009112 | nucleobase metabolic process | IEP | Neighborhood |
MF | GO:0016741 | transferase activity, transferring one-carbon groups | IEP | Neighborhood |
MF | GO:0016743 | carboxyl- or carbamoyltransferase activity | IEP | Neighborhood |
MF | GO:0016830 | carbon-carbon lyase activity | IEP | Neighborhood |
MF | GO:0016831 | carboxy-lyase activity | IEP | Neighborhood |
MF | GO:0016879 | ligase activity, forming carbon-nitrogen bonds | IEP | Neighborhood |
MF | GO:0019843 | rRNA binding | IEP | Neighborhood |
BP | GO:0019856 | pyrimidine nucleobase biosynthetic process | IEP | Neighborhood |
MF | GO:0043169 | cation binding | IEP | Neighborhood |
BP | GO:0044281 | small molecule metabolic process | IEP | Neighborhood |
BP | GO:0046112 | nucleobase biosynthetic process | IEP | Neighborhood |
MF | GO:0046872 | metal ion binding | IEP | Neighborhood |
MF | GO:0046983 | protein dimerization activity | IEP | Neighborhood |
BP | GO:0055086 | nucleobase-containing small molecule metabolic process | IEP | Neighborhood |
MF | GO:0070568 | guanylyltransferase activity | IEP | Neighborhood |
BP | GO:0072527 | pyrimidine-containing compound metabolic process | IEP | Neighborhood |
BP | GO:0072528 | pyrimidine-containing compound biosynthetic process | IEP | Neighborhood |
CC | GO:1905354 | exoribonuclease complex | IEP | Neighborhood |
InterPro domains | Description | Start | Stop |
---|---|---|---|
IPR000268 | RNAP_N/Rpb10 | 1 | 59 |
No external refs found! |