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  5. AMTR_s00055p00057500

AMTR_s00055p00057500 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00055.19

Description : RNA biosynthesis.transcriptional activation.MYB superfamily.MYB transcription factor


Gene families : OG0000002 (Archaeplastida) Phylogenetic Tree(s): No tree available for this family ,
OG_05_0000002 (LandPlants) Phylogenetic Tree(s): OG_05_0000002_tree ,
OG_06_0000006 (SeedPlants) Phylogenetic Tree(s): OG_06_0000006_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00055p00057500
Cluster HCCA: Cluster_159

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00038p00183620 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.MYB... 0.03 Archaeplastida
AT1G09540 ATMYB61, MYB61 myb domain protein 61 0.04 Archaeplastida
GSVIVT01007731001 No alias RNA biosynthesis.transcriptional activation.MYB... 0.02 Archaeplastida
GSVIVT01008484001 No alias RNA biosynthesis.transcriptional activation.MYB... 0.03 Archaeplastida
GSVIVT01017716001 No alias RNA biosynthesis.transcriptional activation.MYB... 0.03 Archaeplastida
GSVIVT01025269001 No alias RNA biosynthesis.transcriptional activation.MYB... 0.03 Archaeplastida
GSVIVT01031341001 No alias RNA biosynthesis.transcriptional activation.MYB... 0.02 Archaeplastida
GSVIVT01032088001 No alias RNA biosynthesis.transcriptional activation.MYB... 0.03 Archaeplastida
GSVIVT01032564001 No alias RNA biosynthesis.transcriptional activation.MYB... 0.03 Archaeplastida
GSVIVT01035467001 No alias RNA biosynthesis.transcriptional activation.MYB... 0.02 Archaeplastida
Gb_06298 No alias transcription factor (MYB) 0.03 Archaeplastida
LOC_Os01g19330.1 No alias transcription factor (MYB) 0.02 Archaeplastida
LOC_Os03g20090.1 No alias transcription factor (MYB) 0.02 Archaeplastida
LOC_Os03g27090.1 No alias transcription factor (MYB) 0.03 Archaeplastida
LOC_Os09g23620.1 No alias transcription factor (MYB) 0.02 Archaeplastida
MA_179894g0010 No alias transcription factor (MYB) 0.02 Archaeplastida
MA_33964g0010 No alias transcription factor (MYB) 0.02 Archaeplastida
Pp3c17_7730V3.1 No alias myb domain protein 55 0.02 Archaeplastida
Smo75978 No alias RNA biosynthesis.transcriptional activation.MYB... 0.02 Archaeplastida
Solyc03g005570.3.1 No alias transcription factor (MYB) 0.03 Archaeplastida
Solyc04g005710.3.1 No alias transcription factor (MYB) 0.03 Archaeplastida
Solyc08g081500.3.1 No alias transcription factor (MYB) 0.03 Archaeplastida
Solyc10g044680.2.1 No alias transcription factor (MYB) 0.03 Archaeplastida
Solyc11g073120.2.1 No alias transcription factor (MYB) 0.02 Archaeplastida
Solyc12g049300.2.1 No alias transcription factor (MYB) 0.02 Archaeplastida
Zm00001e001341_P001 No alias transcription factor (MYB) 0.04 Archaeplastida
Zm00001e009453_P002 No alias transcription factor (MYB) 0.03 Archaeplastida
Zm00001e011944_P001 No alias transcription factor (MYB) 0.03 Archaeplastida
Zm00001e020044_P001 No alias transcription factor (MYB) 0.02 Archaeplastida
Zm00001e020140_P001 No alias transcription factor (MYB) 0.02 Archaeplastida
Zm00001e020963_P001 No alias transcription factor (MYB) 0.04 Archaeplastida
Zm00001e023733_P001 No alias transcription factor (MYB) 0.02 Archaeplastida
Zm00001e028135_P001 No alias transcription factor (MYB) 0.02 Archaeplastida
Zm00001e029600_P001 No alias transcription factor (MYB) 0.02 Archaeplastida
Zm00001e029601_P001 No alias transcription factor (MYB) 0.03 Archaeplastida
Zm00001e032298_P001 No alias transcription factor (MYB) 0.02 Archaeplastida
Zm00001e040265_P001 No alias transcription factor (MYB) 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003682 chromatin binding IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000159 protein phosphatase type 2A complex IEP Neighborhood
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP Neighborhood
MF GO:0003824 catalytic activity IEP Neighborhood
MF GO:0004518 nuclease activity IEP Neighborhood
MF GO:0004540 ribonuclease activity IEP Neighborhood
MF GO:0004659 prenyltransferase activity IEP Neighborhood
CC GO:0005801 cis-Golgi network IEP Neighborhood
BP GO:0006396 RNA processing IEP Neighborhood
BP GO:0006725 cellular aromatic compound metabolic process IEP Neighborhood
BP GO:0006760 folic acid-containing compound metabolic process IEP Neighborhood
BP GO:0006888 ER to Golgi vesicle-mediated transport IEP Neighborhood
BP GO:0006914 autophagy IEP Neighborhood
CC GO:0008287 protein serine/threonine phosphatase complex IEP Neighborhood
BP GO:0009396 folic acid-containing compound biosynthetic process IEP Neighborhood
BP GO:0009987 cellular process IEP Neighborhood
MF GO:0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups IEP Neighborhood
MF GO:0016859 cis-trans isomerase activity IEP Neighborhood
MF GO:0016882 cyclo-ligase activity IEP Neighborhood
MF GO:0019239 deaminase activity IEP Neighborhood
MF GO:0020037 heme binding IEP Neighborhood
BP GO:0030258 lipid modification IEP Neighborhood
BP GO:0030259 lipid glycosylation IEP Neighborhood
MF GO:0030272 5-formyltetrahydrofolate cyclo-ligase activity IEP Neighborhood
BP GO:0042398 cellular modified amino acid biosynthetic process IEP Neighborhood
BP GO:0042558 pteridine-containing compound metabolic process IEP Neighborhood
BP GO:0042559 pteridine-containing compound biosynthetic process IEP Neighborhood
CC GO:0044431 Golgi apparatus part IEP Neighborhood
BP GO:0046483 heterocycle metabolic process IEP Neighborhood
MF GO:0046906 tetrapyrrole binding IEP Neighborhood
BP GO:0048193 Golgi vesicle transport IEP Neighborhood
BP GO:0061919 process utilizing autophagic mechanism IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
BP GO:1901360 organic cyclic compound metabolic process IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood
CC GO:1903293 phosphatase complex IEP Neighborhood
InterPro domains Description Start Stop
IPR001005 SANT/Myb 14 61
IPR001005 SANT/Myb 67 111
No external refs found!