Cre14.g626634


Description : tRNA wybutosine-synthesizing protein 2/3/4 OS=Oryza sativa subsp. japonica


Gene families : OG0007030 (Archaeplastida) Phylogenetic Tree(s): OG0007030_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cre14.g626634
Cluster HCCA: Cluster_77

Target Alias Description ECC score Gene Family Method Actions
AT4G04670 No alias Met-10+ like family protein / kelch repeat-containing protein 0.05 Archaeplastida
GSVIVT01012726001 No alias tRNA wybutosine-synthesizing protein 2/3/4... 0.03 Archaeplastida
LOC_Os07g33100.1 No alias tRNA wybutosine-synthesizing protein 2/3/4 OS=Oryza... 0.02 Archaeplastida
Mp2g18470.1 No alias tRNA wybutosine-synthesizing protein 2/3/4 OS=Oryza... 0.04 Archaeplastida
Pp3c9_15020V3.1 No alias Met-10+ like family protein / kelch repeat-containing protein 0.05 Archaeplastida
Solyc05g055610.4.1 No alias tRNA wybutosine-synthesizing protein 2/3/4... 0.02 Archaeplastida
Zm00001e035100_P003 No alias no hits & (original description: none) 0.02 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source
BP GO:0002097 tRNA wobble base modification IEP Neighborhood
BP GO:0002098 tRNA wobble uridine modification IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0003916 DNA topoisomerase activity IEP Neighborhood
BP GO:0006139 nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0006265 DNA topological change IEP Neighborhood
BP GO:0006396 RNA processing IEP Neighborhood
BP GO:0006399 tRNA metabolic process IEP Neighborhood
BP GO:0006725 cellular aromatic compound metabolic process IEP Neighborhood
BP GO:0008033 tRNA processing IEP Neighborhood
MF GO:0008168 methyltransferase activity IEP Neighborhood
MF GO:0008173 RNA methyltransferase activity IEP Neighborhood
BP GO:0009451 RNA modification IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Neighborhood
MF GO:0016779 nucleotidyltransferase activity IEP Neighborhood
MF GO:0016853 isomerase activity IEP Neighborhood
BP GO:0017038 protein import IEP Neighborhood
MF GO:0017150 tRNA dihydrouridine synthase activity IEP Neighborhood
CC GO:0033588 Elongator holoenzyme complex IEP Neighborhood
BP GO:0034470 ncRNA processing IEP Neighborhood
BP GO:0034641 cellular nitrogen compound metabolic process IEP Neighborhood
BP GO:0046483 heterocycle metabolic process IEP Neighborhood
BP GO:0071103 DNA conformation change IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
MF GO:0140098 catalytic activity, acting on RNA IEP Neighborhood
BP GO:1901360 organic cyclic compound metabolic process IEP Neighborhood
InterPro domains Description Start Stop
IPR030382 MeTrfase_TRM5/TYW2 1372 1460
IPR003827 tRNA_yW-synthesising 27 220
No external refs found!