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  5. Cre16.g652900

Cre16.g652900


Description : Polyadenylate-binding protein RBP45A OS=Arabidopsis thaliana


Gene families : OG0000444 (Archaeplastida) Phylogenetic Tree(s): OG0000444_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cre16.g652900
Cluster HCCA: Cluster_121

Target Alias Description ECC score Gene Family Method Actions
AT4G27000 ATRBP45C RNA-binding (RRM/RBD/RNP motifs) family protein 0.02 Archaeplastida
GSVIVT01025280001 No alias Polyadenylate-binding protein RBP47B OS=Arabidopsis thaliana 0.02 Archaeplastida
GSVIVT01037634001 No alias Polyadenylate-binding protein RBP45 OS=Nicotiana plumbaginifolia 0.02 Archaeplastida
GSVIVT01037635001 No alias Polyadenylate-binding protein RBP45C OS=Arabidopsis thaliana 0.02 Archaeplastida
Gb_20978 No alias mRNA-binding regulatory factor (RBP45/47) 0.02 Archaeplastida
LOC_Os03g07800.1 No alias mRNA-binding regulatory factor (RBP45/47) 0.02 Archaeplastida
LOC_Os04g37690.1 No alias mRNA-binding regulatory factor (RBP45/47) 0.02 Archaeplastida
LOC_Os04g53440.1 No alias mRNA-binding regulatory factor (RBP45/47) 0.01 Archaeplastida
MA_10433660g0010 No alias mRNA-binding regulatory factor (RBP45/47) 0.02 Archaeplastida
MA_21626g0010 No alias Polyadenylate-binding protein RBP47B OS=Arabidopsis... 0.02 Archaeplastida
MA_29443g0010 No alias mRNA-binding regulatory factor (RBP45/47) 0.04 Archaeplastida
Solyc07g064510.3.1 No alias mRNA-binding regulatory factor (RBP45/47) 0.02 Archaeplastida
Solyc11g065880.2.1 No alias mRNA-binding regulatory factor (RBP45/47) 0.03 Archaeplastida
Zm00001e006878_P004 No alias no hits & (original description: none) 0.02 Archaeplastida
Zm00001e009967_P001 No alias mRNA-binding regulatory factor (RBP45/47) 0.01 Archaeplastida
Zm00001e040981_P001 No alias mRNA-binding regulatory factor (RBP45/47) 0.05 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000350 generation of catalytic spliceosome for second transesterification step IEP NeighborhoodNo alias
MF GO:0003729 mRNA binding IEP Neighborhood
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP Neighborhood
CC GO:0005667 transcription factor complex IEP Neighborhood
CC GO:0005669 transcription factor TFIID complex IEP Neighborhood
CC GO:0005849 mRNA cleavage factor complex IEP Neighborhood
BP GO:0006139 nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0006325 chromatin organization IEP Neighborhood
BP GO:0006334 nucleosome assembly IEP Neighborhood
BP GO:0006351 transcription, DNA-templated IEP Neighborhood
BP GO:0006352 DNA-templated transcription, initiation IEP Neighborhood
BP GO:0006367 transcription initiation from RNA polymerase II promoter IEP Neighborhood
BP GO:0006378 mRNA polyadenylation IEP Neighborhood
BP GO:0006396 RNA processing IEP Neighborhood
BP GO:0006397 mRNA processing IEP Neighborhood
BP GO:0006457 protein folding IEP Neighborhood
BP GO:0006725 cellular aromatic compound metabolic process IEP Neighborhood
BP GO:0006807 nitrogen compound metabolic process IEP Neighborhood
BP GO:0009059 macromolecule biosynthetic process IEP Neighborhood
BP GO:0009987 cellular process IEP Neighborhood
BP GO:0016043 cellular component organization IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
BP GO:0016071 mRNA metabolic process IEP Neighborhood
CC GO:0016272 prefoldin complex IEP Neighborhood
BP GO:0018130 heterocycle biosynthetic process IEP Neighborhood
BP GO:0019438 aromatic compound biosynthetic process IEP Neighborhood
BP GO:0022607 cellular component assembly IEP Neighborhood
BP GO:0022618 ribonucleoprotein complex assembly IEP Neighborhood
BP GO:0031123 RNA 3'-end processing IEP Neighborhood
BP GO:0031124 mRNA 3'-end processing IEP Neighborhood
BP GO:0032774 RNA biosynthetic process IEP Neighborhood
CC GO:0032991 protein-containing complex IEP Neighborhood
MF GO:0034062 5'-3' RNA polymerase activity IEP Neighborhood
BP GO:0034622 cellular protein-containing complex assembly IEP Neighborhood
BP GO:0034641 cellular nitrogen compound metabolic process IEP Neighborhood
BP GO:0034645 cellular macromolecule biosynthetic process IEP Neighborhood
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP Neighborhood
BP GO:0034728 nucleosome organization IEP Neighborhood
BP GO:0043170 macromolecule metabolic process IEP Neighborhood
BP GO:0043631 RNA polyadenylation IEP Neighborhood
BP GO:0043933 protein-containing complex subunit organization IEP Neighborhood
BP GO:0044237 cellular metabolic process IEP Neighborhood
BP GO:0044249 cellular biosynthetic process IEP Neighborhood
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Neighborhood
CC GO:0044428 nuclear part IEP Neighborhood
CC GO:0044451 nucleoplasm part IEP Neighborhood
CC GO:0044798 nuclear transcription factor complex IEP Neighborhood
BP GO:0046483 heterocycle metabolic process IEP Neighborhood
MF GO:0051082 unfolded protein binding IEP Neighborhood
BP GO:0065003 protein-containing complex assembly IEP Neighborhood
BP GO:0065004 protein-DNA complex assembly IEP Neighborhood
BP GO:0071824 protein-DNA complex subunit organization IEP Neighborhood
BP GO:0071826 ribonucleoprotein complex subunit organization IEP Neighborhood
BP GO:0071840 cellular component organization or biogenesis IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
CC GO:0090575 RNA polymerase II transcription factor complex IEP Neighborhood
BP GO:0097659 nucleic acid-templated transcription IEP Neighborhood
MF GO:0097747 RNA polymerase activity IEP Neighborhood
BP GO:1901360 organic cyclic compound metabolic process IEP Neighborhood
BP GO:1901362 organic cyclic compound biosynthetic process IEP Neighborhood
BP GO:1901576 organic substance biosynthetic process IEP Neighborhood
InterPro domains Description Start Stop
IPR000504 RRM_dom 14 84
IPR000504 RRM_dom 121 184
No external refs found!