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  5. AMTR_s00055p00221900

AMTR_s00055p00221900 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00055.171

Description : Chromatin organisation.histones.H2A-type histone


Gene families : OG0000174 (Archaeplastida) Phylogenetic Tree(s): OG0000174_tree ,
OG_05_0000204 (LandPlants) Phylogenetic Tree(s): OG_05_0000204_tree ,
OG_06_0000166 (SeedPlants) Phylogenetic Tree(s): OG_06_0000166_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00055p00221900
Cluster HCCA: Cluster_137

Target Alias Description ECC score Gene Family Method Actions
AT1G08880 GAMMA-H2AX,... Histone superfamily protein 0.08 Archaeplastida
AT1G54690 GAMMA-H2AX,... gamma histone variant H2AX 0.02 Archaeplastida
AT4G27230 HTA2 histone H2A 2 0.03 Archaeplastida
AT5G27670 HTA7 histone H2A 7 0.03 Archaeplastida
Cre06.g264750 No alias Chromatin organisation.histones.H2A-type histone 0.06 Archaeplastida
Cre06.g264950 No alias Chromatin organisation.histones.H2A-type histone 0.06 Archaeplastida
Cre06.g265350 No alias Chromatin organisation.histones.H2A-type histone 0.05 Archaeplastida
Cre06.g266700 No alias Chromatin organisation.histones.H2A-type histone 0.06 Archaeplastida
Cre06.g268050 No alias Chromatin organisation.histones.H2A-type histone 0.05 Archaeplastida
Cre06.g268300 No alias Chromatin organisation.histones.H2A-type histone 0.05 Archaeplastida
Cre06.g271350 No alias Chromatin organisation.histones.H2A-type histone 0.06 Archaeplastida
Cre06.g273900 No alias Chromatin organisation.histones.H2A-type histone 0.06 Archaeplastida
Cre06.g274200 No alias Chromatin organisation.histones.H2A-type histone 0.06 Archaeplastida
Cre06.g274800 No alias Chromatin organisation.histones.H2A-type histone 0.05 Archaeplastida
Cre06.g275850 No alias Chromatin organisation.histones.H2A-type histone 0.06 Archaeplastida
Cre06.g276500 No alias Chromatin organisation.histones.H2A-type histone 0.05 Archaeplastida
Cre06.g276950 No alias Chromatin organisation.histones.H2A-type histone 0.06 Archaeplastida
Cre12.g504500 No alias Chromatin organisation.histones.H2A-type histone 0.06 Archaeplastida
Cre12.g504750 No alias Chromatin organisation.histones.H2A-type histone 0.06 Archaeplastida
Cre12.g505550 No alias Chromatin organisation.histones.H2A-type histone 0.06 Archaeplastida
Cre12.g506250 No alias Chromatin organisation.histones.H2A-type histone 0.06 Archaeplastida
Cre13.g570100 No alias Chromatin organisation.histones.H2A-type histone 0.06 Archaeplastida
Cre17.g708550 No alias Chromatin organisation.histones.H2A-type histone 0.06 Archaeplastida
Cre17.g709200 No alias Chromatin organisation.histones.H2A-type histone 0.06 Archaeplastida
Cre17.g710400 No alias Chromatin organisation.histones.H2A-type histone 0.06 Archaeplastida
Cre17.g711700 No alias Chromatin organisation.histones.H2A-type histone 0.06 Archaeplastida
Cre17.g713400 No alias Chromatin organisation.histones.H2A-type histone 0.06 Archaeplastida
Cre17.g714500 No alias Chromatin organisation.histones.H2A-type histone 0.08 Archaeplastida
GSVIVT01011034001 No alias Chromatin organisation.histones.H2A-type histone 0.03 Archaeplastida
GSVIVT01014580001 No alias Chromatin organisation.histones.H2A-type histone 0.07 Archaeplastida
Gb_06384 No alias histone (H2A) 0.1 Archaeplastida
Gb_07070 No alias histone (H2A) 0.05 Archaeplastida
Gb_12570 No alias histone (H2A) 0.03 Archaeplastida
Gb_25326 No alias histone (H2A) 0.03 Archaeplastida
Gb_34906 No alias histone (H2A) 0.03 Archaeplastida
LOC_Os05g02300.1 No alias histone (H2A) 0.03 Archaeplastida
LOC_Os05g38640.1 No alias histone (H2A) 0.03 Archaeplastida
LOC_Os07g36130.1 No alias histone (H2A) 0.02 Archaeplastida
LOC_Os07g36140.1 No alias histone (H2A) 0.03 Archaeplastida
LOC_Os08g33100.1 No alias histone (H2A) 0.05 Archaeplastida
LOC_Os12g25120.1 No alias histone (H2A) 0.02 Archaeplastida
MA_10426943g0010 No alias histone (H2A) 0.03 Archaeplastida
MA_213048g0010 No alias histone (H2A) 0.03 Archaeplastida
MA_22203g0020 No alias histone (H2A) 0.04 Archaeplastida
MA_962778g0010 No alias histone (H2A) 0.03 Archaeplastida
Mp2g00760.1 No alias histone (H2A) 0.02 Archaeplastida
Mp3g00840.1 No alias histone (H2A) 0.03 Archaeplastida
Solyc03g005220.4.1 No alias histone (H2A) 0.03 Archaeplastida
Solyc06g084430.4.1 No alias histone (H2A) 0.07 Archaeplastida
Solyc09g010400.3.1 No alias histone (H2A) 0.03 Archaeplastida
Solyc09g074300.1.1 No alias histone (H2A) 0.06 Archaeplastida
Solyc10g006560.4.1 No alias histone (H2A) 0.03 Archaeplastida
Solyc11g073250.2.1 No alias histone (H2A) 0.03 Archaeplastida
Solyc12g005270.2.1 No alias histone (H2A) 0.07 Archaeplastida
Zm00001e010232_P001 No alias histone (H2A) 0.03 Archaeplastida
Zm00001e010515_P001 No alias histone (H2A) 0.05 Archaeplastida
Zm00001e011643_P001 No alias histone (H2A) 0.02 Archaeplastida
Zm00001e012144_P001 No alias histone (H2A) 0.05 Archaeplastida
Zm00001e020483_P001 No alias histone (H2A) 0.02 Archaeplastida
Zm00001e033014_P001 No alias histone (H2A) 0.02 Archaeplastida
Zm00001e034815_P001 No alias histone (H2A) 0.03 Archaeplastida
Zm00001e035183_P002 No alias histone (H2A) 0.06 Archaeplastida
Zm00001e038465_P002 No alias histone (H2A) 0.02 Archaeplastida
Zm00001e039735_P001 No alias histone (H2A) 0.02 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR007125 Histone_H2A/H2B/H3 19 92
No external refs found!