Cre16.g677700


Description : Protein translocation.nucleus.nucleocytoplasmic transport.nuclear pore complex (NPC).central subcomplex.NUP62 nucleoporin


Gene families : OG0006534 (Archaeplastida) Phylogenetic Tree(s): OG0006534_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cre16.g677700
Cluster HCCA: Cluster_62

Target Alias Description ECC score Gene Family Method Actions
AT2G45000 EMB2766 structural constituent of nuclear pore 0.02 Archaeplastida
GSVIVT01018216001 No alias Protein translocation.nucleus.nucleocytoplasmic... 0.05 Archaeplastida
Gb_25259 No alias NUP62 nucleoporin of nuclear pore complex 0.01 Archaeplastida
LOC_Os01g63780.1 No alias NUP62 nucleoporin of nuclear pore complex 0.02 Archaeplastida
Mp1g03860.1 No alias NUP62 nucleoporin of nuclear pore complex 0.05 Archaeplastida
Pp3c15_14630V3.1 No alias structural constituent of nuclear pore 0.05 Archaeplastida
Solyc01g090670.3.1 No alias NUP62 nucleoporin of nuclear pore complex 0.05 Archaeplastida
Zm00001e028707_P001 No alias NUP62 nucleoporin of nuclear pore complex 0.04 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source
MF GO:0000062 fatty-acyl-CoA binding IEP Neighborhood
MF GO:0000149 SNARE binding IEP Neighborhood
CC GO:0000151 ubiquitin ligase complex IEP Neighborhood
BP GO:0000726 non-recombinational repair IEP Neighborhood
CC GO:0001401 mitochondrial sorting and assembly machinery complex IEP Neighborhood
MF GO:0003779 actin binding IEP Neighborhood
MF GO:0003916 DNA topoisomerase activity IEP Neighborhood
MF GO:0003918 DNA topoisomerase type II (ATP-hydrolyzing) activity IEP Neighborhood
MF GO:0003989 acetyl-CoA carboxylase activity IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
CC GO:0005643 nuclear pore IEP Neighborhood
BP GO:0006139 nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0006259 DNA metabolic process IEP Neighborhood
BP GO:0006265 DNA topological change IEP Neighborhood
BP GO:0006281 DNA repair IEP Neighborhood
BP GO:0006298 mismatch repair IEP Neighborhood
BP GO:0006302 double-strand break repair IEP Neighborhood
BP GO:0006303 double-strand break repair via nonhomologous end joining IEP Neighborhood
BP GO:0006354 DNA-templated transcription, elongation IEP Neighborhood
BP GO:0006368 transcription elongation from RNA polymerase II promoter IEP Neighborhood
BP GO:0006497 protein lipidation IEP Neighborhood
BP GO:0006505 GPI anchor metabolic process IEP Neighborhood
BP GO:0006506 GPI anchor biosynthetic process IEP Neighborhood
BP GO:0006633 fatty acid biosynthetic process IEP Neighborhood
BP GO:0006643 membrane lipid metabolic process IEP Neighborhood
BP GO:0006661 phosphatidylinositol biosynthetic process IEP Neighborhood
BP GO:0006664 glycolipid metabolic process IEP Neighborhood
BP GO:0006725 cellular aromatic compound metabolic process IEP Neighborhood
BP GO:0006950 response to stress IEP Neighborhood
BP GO:0006974 cellular response to DNA damage stimulus IEP Neighborhood
BP GO:0006996 organelle organization IEP Neighborhood
BP GO:0007010 cytoskeleton organization IEP Neighborhood
CC GO:0008023 transcription elongation factor complex IEP Neighborhood
MF GO:0008094 DNA-dependent ATPase activity IEP Neighborhood
MF GO:0008536 Ran GTPase binding IEP Neighborhood
BP GO:0008610 lipid biosynthetic process IEP Neighborhood
MF GO:0008641 ubiquitin-like modifier activating enzyme activity IEP Neighborhood
BP GO:0009247 glycolipid biosynthetic process IEP Neighborhood
BP GO:0016043 cellular component organization IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
MF GO:0016421 CoA carboxylase activity IEP Neighborhood
BP GO:0016569 covalent chromatin modification IEP Neighborhood
BP GO:0016570 histone modification IEP Neighborhood
CC GO:0016593 Cdc73/Paf1 complex IEP Neighborhood
MF GO:0016874 ligase activity IEP Neighborhood
MF GO:0016877 ligase activity, forming carbon-sulfur bonds IEP Neighborhood
MF GO:0016885 ligase activity, forming carbon-carbon bonds IEP Neighborhood
MF GO:0017016 Ras GTPase binding IEP Neighborhood
MF GO:0017056 structural constituent of nuclear pore IEP Neighborhood
MF GO:0019905 syntaxin binding IEP Neighborhood
MF GO:0030983 mismatched DNA binding IEP Neighborhood
MF GO:0031267 small GTPase binding IEP Neighborhood
CC GO:0032991 protein-containing complex IEP Neighborhood
MF GO:0033218 amide binding IEP Neighborhood
BP GO:0033554 cellular response to stress IEP Neighborhood
MF GO:0034450 ubiquitin-ubiquitin ligase activity IEP Neighborhood
BP GO:0034641 cellular nitrogen compound metabolic process IEP Neighborhood
BP GO:0044255 cellular lipid metabolic process IEP Neighborhood
CC GO:0044422 organelle part IEP Neighborhood
CC GO:0044424 intracellular part IEP Neighborhood
CC GO:0044428 nuclear part IEP Neighborhood
CC GO:0044446 intracellular organelle part IEP Neighborhood
CC GO:0044455 mitochondrial membrane part IEP Neighborhood
CC GO:0044464 cell part IEP Neighborhood
BP GO:0045017 glycerolipid biosynthetic process IEP Neighborhood
BP GO:0046467 membrane lipid biosynthetic process IEP Neighborhood
BP GO:0046474 glycerophospholipid biosynthetic process IEP Neighborhood
BP GO:0046483 heterocycle metabolic process IEP Neighborhood
BP GO:0051716 cellular response to stimulus IEP Neighborhood
MF GO:0061505 DNA topoisomerase II activity IEP Neighborhood
MF GO:0061630 ubiquitin protein ligase activity IEP Neighborhood
MF GO:0061659 ubiquitin-like protein ligase activity IEP Neighborhood
BP GO:0071103 DNA conformation change IEP Neighborhood
BP GO:0071840 cellular component organization or biogenesis IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
CC GO:0098798 mitochondrial protein complex IEP Neighborhood
CC GO:0098799 outer mitochondrial membrane protein complex IEP Neighborhood
BP GO:1901360 organic cyclic compound metabolic process IEP Neighborhood
MF GO:1901567 fatty acid derivative binding IEP Neighborhood
MF GO:1901681 sulfur compound binding IEP Neighborhood
BP GO:1903509 liposaccharide metabolic process IEP Neighborhood
InterPro domains Description Start Stop
IPR025574 Nucleoporin_FG_rpt 85 175
IPR007758 Nucleoporin_NSP1_C 466 566
No external refs found!