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AT1G51580


Description : RNA-binding KH domain-containing protein


Gene families : OG0000393 (Archaeplastida) Phylogenetic Tree(s): OG0000393_tree ,
OG_05_0000380 (LandPlants) Phylogenetic Tree(s): OG_05_0000380_tree ,
OG_06_0002279 (SeedPlants) Phylogenetic Tree(s): OG_06_0002279_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT1G51580
Cluster HCCA: Cluster_80

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00092p00116010 evm_27.TU.AmTr_v1... KH domain-containing protein At4g18375 OS=Arabidopsis thaliana 0.03 Archaeplastida
LOC_Os06g23460.1 No alias RNA-binding KH domain-containing protein RCF3... 0.03 Archaeplastida
LOC_Os08g10030.1 No alias KH domain-containing protein At4g18375 OS=Arabidopsis... 0.05 Archaeplastida
Solyc03g034200.3.1 No alias RNA-binding KH domain-containing protein RCF3... 0.02 Archaeplastida
Zm00001e012623_P002 No alias RNA-binding KH domain-containing protein RCF3... 0.05 Archaeplastida
Zm00001e026127_P004 No alias RNA-binding KH domain-containing protein RCF3... 0.03 Archaeplastida
Zm00001e037947_P004 No alias no hits & (original description: none) 0.04 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding ISS Interproscan
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Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0005200 structural constituent of cytoskeleton IEP Neighborhood
CC GO:0005834 heterotrimeric G-protein complex IEP Neighborhood
BP GO:0006897 endocytosis IEP Neighborhood
BP GO:0007033 vacuole organization IEP Neighborhood
MF GO:0008276 protein methyltransferase activity IEP Neighborhood
BP GO:0008380 RNA splicing IEP Neighborhood
BP GO:0009790 embryo development IEP Neighborhood
BP GO:0009793 embryo development ending in seed dormancy IEP Neighborhood
BP GO:0009838 abscission IEP Neighborhood
BP GO:0010050 vegetative phase change IEP Neighborhood
BP GO:0010227 floral organ abscission IEP Neighborhood
BP GO:0016579 protein deubiquitination IEP Neighborhood
MF GO:0031072 heat shock protein binding IEP Neighborhood
BP GO:0032386 regulation of intracellular transport IEP Neighborhood
BP GO:0032388 positive regulation of intracellular transport IEP Neighborhood
BP GO:0032880 regulation of protein localization IEP Neighborhood
BP GO:0033157 regulation of intracellular protein transport IEP Neighborhood
MF GO:0042054 histone methyltransferase activity IEP Neighborhood
BP GO:0044088 regulation of vacuole organization IEP Neighborhood
BP GO:0044090 positive regulation of vacuole organization IEP Neighborhood
BP GO:0048825 cotyledon development IEP Neighborhood
BP GO:0051050 positive regulation of transport IEP Neighborhood
BP GO:0051222 positive regulation of protein transport IEP Neighborhood
BP GO:0051223 regulation of protein transport IEP Neighborhood
MF GO:0051879 Hsp90 protein binding IEP Neighborhood
BP GO:0060341 regulation of cellular localization IEP Neighborhood
BP GO:0070201 regulation of establishment of protein localization IEP Neighborhood
BP GO:0070536 protein K63-linked deubiquitination IEP Neighborhood
BP GO:0070647 protein modification by small protein conjugation or removal IEP Neighborhood
BP GO:0071108 protein K48-linked deubiquitination IEP Neighborhood
BP GO:0090087 regulation of peptide transport IEP Neighborhood
BP GO:0090316 positive regulation of intracellular protein transport IEP Neighborhood
BP GO:0098657 import into cell IEP Neighborhood
BP GO:1903827 regulation of cellular protein localization IEP Neighborhood
BP GO:1903829 positive regulation of cellular protein localization IEP Neighborhood
BP GO:1904951 positive regulation of establishment of protein localization IEP Neighborhood
CC GO:1905360 GTPase complex IEP Neighborhood
InterPro domains Description Start Stop
IPR004088 KH_dom_type_1 279 328
IPR004088 KH_dom_type_1 362 429
IPR004088 KH_dom_type_1 151 216
IPR004088 KH_dom_type_1 551 613
IPR004088 KH_dom_type_1 22 71
No external refs found!