Cre16.g680900


Description : RNA biosynthesis.DNA-dependent RNA polymerase (Pol) complexes.Pol II catalytic subunits.subunit 1


Gene families : OG0000599 (Archaeplastida) Phylogenetic Tree(s): OG0000599_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cre16.g680900
Cluster HCCA: Cluster_39

Target Alias Description ECC score Gene Family Method Actions
AT2G40030 DRD3, ATNRPD1B,... nuclear RNA polymerase D1B 0.02 Archaeplastida
AT4G35800 RNA_POL_II_LSRNA_... RNA polymerase II large subunit 0.03 Archaeplastida
Cpa|evm.model.tig00000241.15 No alias RNA biosynthesis.DNA-dependent RNA polymerase (Pol)... 0.02 Archaeplastida
GSVIVT01025079001 No alias RNA biosynthesis.DNA-dependent RNA polymerase (Pol)... 0.03 Archaeplastida
Gb_21425 No alias subunit 1 of Pol V RNA polymerase 0.02 Archaeplastida
LOC_Os02g05880.1 No alias subunit 1 of Pol V RNA polymerase 0.02 Archaeplastida
MA_8720349g0010 No alias subunit 1 of Pol V RNA polymerase 0.02 Archaeplastida
Mp4g14340.1 No alias subunit 1 of Pol II RNA polymerase 0.02 Archaeplastida
Mp7g16790.1 No alias subunit 1 of Pol III RNA polymerase 0.02 Archaeplastida
Smo441655 No alias RNA biosynthesis.DNA-dependent RNA polymerase (Pol)... 0.02 Archaeplastida
Smo442419 No alias RNA biosynthesis.DNA-dependent RNA polymerase (Pol)... 0.02 Archaeplastida
Smo90820 No alias DNA-directed RNA polymerase V subunit 1 OS=Arabidopsis thaliana 0.01 Archaeplastida
Solyc01g096390.4.1 No alias subunit 1 of Pol V RNA polymerase 0.02 Archaeplastida
Solyc11g072730.2.1 No alias subunit 1 of Pol III RNA polymerase 0.01 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEA Interproscan
BP GO:0006351 transcription, DNA-templated IEA Interproscan
Type GO Term Name Evidence Source
MF GO:0003779 actin binding IEP Neighborhood
MF GO:0004190 aspartic-type endopeptidase activity IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
BP GO:0006633 fatty acid biosynthetic process IEP Neighborhood
BP GO:0006810 transport IEP Neighborhood
BP GO:0006886 intracellular protein transport IEP Neighborhood
BP GO:0006904 vesicle docking involved in exocytosis IEP Neighborhood
BP GO:0007010 cytoskeleton organization IEP Neighborhood
MF GO:0008092 cytoskeletal protein binding IEP Neighborhood
BP GO:0008104 protein localization IEP Neighborhood
MF GO:0008536 Ran GTPase binding IEP Neighborhood
BP GO:0015031 protein transport IEP Neighborhood
BP GO:0015833 peptide transport IEP Neighborhood
BP GO:0016192 vesicle-mediated transport IEP Neighborhood
BP GO:0016485 protein processing IEP Neighborhood
MF GO:0017016 Ras GTPase binding IEP Neighborhood
BP GO:0022406 membrane docking IEP Neighborhood
CC GO:0030119 AP-type membrane coat adaptor complex IEP Neighborhood
CC GO:0030131 clathrin adaptor complex IEP Neighborhood
MF GO:0031267 small GTPase binding IEP Neighborhood
BP GO:0033036 macromolecule localization IEP Neighborhood
BP GO:0042886 amide transport IEP Neighborhood
MF GO:0043015 gamma-tubulin binding IEP Neighborhood
BP GO:0045184 establishment of protein localization IEP Neighborhood
BP GO:0046907 intracellular transport IEP Neighborhood
BP GO:0048278 vesicle docking IEP Neighborhood
BP GO:0051179 localization IEP Neighborhood
BP GO:0051234 establishment of localization IEP Neighborhood
BP GO:0051604 protein maturation IEP Neighborhood
BP GO:0051640 organelle localization IEP Neighborhood
BP GO:0051641 cellular localization IEP Neighborhood
BP GO:0051649 establishment of localization in cell IEP Neighborhood
MF GO:0070001 aspartic-type peptidase activity IEP Neighborhood
BP GO:0071702 organic substance transport IEP Neighborhood
BP GO:0071705 nitrogen compound transport IEP Neighborhood
BP GO:0140029 exocytic process IEP Neighborhood
BP GO:0140056 organelle localization by membrane tethering IEP Neighborhood
InterPro domains Description Start Stop
IPR000684 RNA_pol_II_repeat_euk 1630 1643
IPR000684 RNA_pol_II_repeat_euk 1707 1720
IPR000684 RNA_pol_II_repeat_euk 1616 1629
IPR000684 RNA_pol_II_repeat_euk 1526 1538
IPR000684 RNA_pol_II_repeat_euk 1539 1552
IPR000684 RNA_pol_II_repeat_euk 1567 1580
IPR000684 RNA_pol_II_repeat_euk 1686 1699
IPR000684 RNA_pol_II_repeat_euk 1637 1650
IPR000684 RNA_pol_II_repeat_euk 1581 1594
IPR000684 RNA_pol_II_repeat_euk 1595 1608
IPR000684 RNA_pol_II_repeat_euk 1651 1664
IPR000684 RNA_pol_II_repeat_euk 1700 1713
IPR000684 RNA_pol_II_repeat_euk 1602 1615
IPR000684 RNA_pol_II_repeat_euk 1609 1622
IPR000684 RNA_pol_II_repeat_euk 1560 1573
IPR000684 RNA_pol_II_repeat_euk 1672 1685
IPR000684 RNA_pol_II_repeat_euk 1588 1601
IPR000684 RNA_pol_II_repeat_euk 1658 1671
IPR000684 RNA_pol_II_repeat_euk 1644 1657
IPR000684 RNA_pol_II_repeat_euk 1623 1636
IPR000684 RNA_pol_II_repeat_euk 1574 1587
IPR000684 RNA_pol_II_repeat_euk 1553 1566
IPR007080 RNA_pol_Rpb1_1 15 328
IPR000722 RNA_pol_asu 330 498
IPR007066 RNA_pol_Rpb1_3 501 664
IPR007081 RNA_pol_Rpb1_5 802 1396
IPR007073 RNA_pol_Rpb1_7 1138 1265
IPR007083 RNA_pol_Rpb1_4 690 795
IPR007075 RNA_pol_Rpb1_6 868 1051
No external refs found!