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  5. Cre16.g682350

Cre16.g682350


Description : Protein degradation.peptide tagging.Ubiquitin (UBQ)-anchor addition (ubiquitylation).UBQ-ligase E3 activities.RING-domain E3 ligase activities.RING-HCb-type E3 ligase


Gene families : OG0000511 (Archaeplastida) Phylogenetic Tree(s): OG0000511_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cre16.g682350
Cluster HCCA: Cluster_39

Target Alias Description ECC score Gene Family Method Actions
AT1G05890 ARI5, ATARI5 RING/U-box superfamily protein 0.02 Archaeplastida
AT5G08730 ATARI16, ARI16 IBR domain-containing protein 0.01 Archaeplastida
Cpa|evm.model.tig00020553.110 No alias No description available 0.02 Archaeplastida
Cpa|evm.model.tig00020556.44 No alias Protein degradation.peptide tagging.Ubiquitin... 0.04 Archaeplastida
GSVIVT01031904001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.02 Archaeplastida
MA_87115g0020 No alias RBR-Ariadne-class E3 ubiquitin ligase 0.01 Archaeplastida
Pp3c24_15470V3.1 No alias IBR domain-containing protein 0.01 Archaeplastida
Solyc01g005650.3.1 No alias RBR-Ariadne-class E3 ubiquitin ligase 0.01 Archaeplastida
Zm00001e003726_P005 No alias RBR-Ariadne-class E3 ubiquitin ligase 0.01 Archaeplastida
Zm00001e012428_P001 No alias RBR-Ariadne-class E3 ubiquitin ligase 0.01 Archaeplastida
Zm00001e024244_P001 No alias RBR-Ariadne-class E3 ubiquitin ligase 0.01 Archaeplastida
Zm00001e038664_P001 No alias RBR-Ariadne-class E3 ubiquitin ligase 0.01 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000394 RNA splicing, via endonucleolytic cleavage and ligation IEP Neighborhood
CC GO:0000786 nucleosome IEP Neighborhood
MF GO:0001882 nucleoside binding IEP Neighborhood
MF GO:0001883 purine nucleoside binding IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003677 DNA binding IEP Neighborhood
MF GO:0003779 actin binding IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
MF GO:0005516 calmodulin binding IEP Neighborhood
MF GO:0005525 GTP binding IEP Neighborhood
BP GO:0006351 transcription, DNA-templated IEP Neighborhood
BP GO:0006388 tRNA splicing, via endonucleolytic cleavage and ligation IEP Neighborhood
BP GO:0007034 vacuolar transport IEP Neighborhood
MF GO:0008134 transcription factor binding IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
BP GO:0009059 macromolecule biosynthetic process IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
MF GO:0017025 TBP-class protein binding IEP Neighborhood
MF GO:0019001 guanyl nucleotide binding IEP Neighborhood
MF GO:0032549 ribonucleoside binding IEP Neighborhood
MF GO:0032550 purine ribonucleoside binding IEP Neighborhood
MF GO:0032561 guanyl ribonucleotide binding IEP Neighborhood
BP GO:0032774 RNA biosynthetic process IEP Neighborhood
CC GO:0032993 protein-DNA complex IEP Neighborhood
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP Neighborhood
CC GO:0044427 chromosomal part IEP Neighborhood
CC GO:0044815 DNA packaging complex IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
BP GO:0097659 nucleic acid-templated transcription IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood
InterPro domains Description Start Stop
IPR002867 IBR_dom 284 330
IPR002867 IBR_dom 203 267
No external refs found!