AMTR_s00056p00045910 (evm_27.TU.AmTr_v1.0_sc...)

Aliases : evm_27.TU.AmTr_v1.0_scaffold00056.28

Description : RNA processing.RNA splicing.spliceosome-associated non-snRNP MOS4-associated complex (MAC).associated components.SKIP/MAC6 component

Gene families : OG0002997 (Archaeplastida) Phylogenetic Tree(s): OG0002997_tree ,
OG_05_0003726 (LandPlants) Phylogenetic Tree(s): OG_05_0003726_tree ,
OG_06_0005865 (SeedPlants) Phylogenetic Tree(s): OG_06_0005865_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type Description Actions
Neighborhood HRR: AMTR_s00056p00045910
Cluster HCCA: Cluster_260

Target Alias Description ECC score Gene Family Method Actions
Cre01.g051100 No alias RNA processing.RNA splicing.spliceosome-associated... 0.02 Archaeplastida
GSVIVT01015321001 No alias RNA processing.RNA splicing.spliceosome-associated... 0.04 Archaeplastida
Zm00001e023830_P001 No alias component SKIP/MAC6 of non-snRNP MOS4-associated complex 0.06 Archaeplastida

Type GO Term Name Evidence Source
BP GO:0000398 mRNA splicing, via spliceosome IEA Interproscan
CC GO:0005681 spliceosomal complex IEA Interproscan
Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0004812 aminoacyl-tRNA ligase activity IEP Neighborhood
CC GO:0005634 nucleus IEP Neighborhood
BP GO:0006325 chromatin organization IEP Neighborhood
BP GO:0006352 DNA-templated transcription, initiation IEP Neighborhood
BP GO:0006418 tRNA aminoacylation for protein translation IEP Neighborhood
BP GO:0016569 covalent chromatin modification IEP Neighborhood
BP GO:0016570 histone modification IEP Neighborhood
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP Neighborhood
InterPro domains Description Start Stop
IPR004015 SKI-int_prot_SKIP_SNW-dom 181 340
No external refs found!