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  5. Cre16.g688750

Cre16.g688750


Description : Suppressor of mec-8 and unc-52 protein homolog 2 OS=Arabidopsis thaliana


Gene families : OG0005545 (Archaeplastida) Phylogenetic Tree(s): OG0005545_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cre16.g688750
Cluster HCCA: Cluster_103

Target Alias Description ECC score Gene Family Method Actions
Gb_08082 No alias Suppressor of mec-8 and unc-52 protein homolog 2... 0.02 Archaeplastida
LOC_Os11g04950.1 No alias Suppressor of mec-8 and unc-52 protein homolog 2... 0.03 Archaeplastida
MA_713g0010 No alias Suppressor of mec-8 and unc-52 protein homolog 2... 0.02 Archaeplastida
Mp5g17010.1 No alias Suppressor of mec-8 and unc-52 protein homolog 2... 0.03 Archaeplastida
Pp3c19_4680V3.1 No alias RED family protein 0.03 Archaeplastida
Smo122486 No alias Suppressor of mec-8 and unc-52 protein homolog 2... 0.02 Archaeplastida
Solyc07g017490.3.1 No alias Suppressor of mec-8 and unc-52 protein homolog 2... 0.04 Archaeplastida
Zm00001e039187_P001 No alias Suppressor of mec-8 and unc-52 protein homolog 2... 0.02 Archaeplastida

Type GO Term Name Evidence Source
CC GO:0005634 nucleus IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000228 nuclear chromosome IEP Neighborhood
BP GO:0000375 RNA splicing, via transesterification reactions IEP Neighborhood
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Neighborhood
BP GO:0000398 mRNA splicing, via spliceosome IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003682 chromatin binding IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
CC GO:0005681 spliceosomal complex IEP Neighborhood
CC GO:0005694 chromosome IEP Neighborhood
CC GO:0005789 endoplasmic reticulum membrane IEP Neighborhood
BP GO:0006139 nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0006325 chromatin organization IEP Neighborhood
BP GO:0006338 chromatin remodeling IEP Neighborhood
BP GO:0006354 DNA-templated transcription, elongation IEP Neighborhood
BP GO:0006368 transcription elongation from RNA polymerase II promoter IEP Neighborhood
BP GO:0006396 RNA processing IEP Neighborhood
BP GO:0006397 mRNA processing IEP Neighborhood
BP GO:0006725 cellular aromatic compound metabolic process IEP Neighborhood
CC GO:0008023 transcription elongation factor complex IEP Neighborhood
BP GO:0008380 RNA splicing IEP Neighborhood
MF GO:0008536 Ran GTPase binding IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
BP GO:0016071 mRNA metabolic process IEP Neighborhood
BP GO:0016569 covalent chromatin modification IEP Neighborhood
BP GO:0016570 histone modification IEP Neighborhood
CC GO:0016593 Cdc73/Paf1 complex IEP Neighborhood
MF GO:0017016 Ras GTPase binding IEP Neighborhood
BP GO:0031123 RNA 3'-end processing IEP Neighborhood
BP GO:0031124 mRNA 3'-end processing IEP Neighborhood
MF GO:0031267 small GTPase binding IEP Neighborhood
BP GO:0034641 cellular nitrogen compound metabolic process IEP Neighborhood
CC GO:0044422 organelle part IEP Neighborhood
CC GO:0044428 nuclear part IEP Neighborhood
CC GO:0044446 intracellular organelle part IEP Neighborhood
BP GO:0046483 heterocycle metabolic process IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
BP GO:1901360 organic cyclic compound metabolic process IEP Neighborhood
InterPro domains Description Start Stop
IPR012492 RED_C 510 626
IPR012916 RED_N 52 297
No external refs found!