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  5. Cre16.g692550

Cre16.g692550


Description : DNA mismatch repair protein MSH4 OS=Arabidopsis thaliana


Gene families : OG0005018 (Archaeplastida) Phylogenetic Tree(s): OG0005018_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cre16.g692550
Cluster HCCA: Cluster_99

Target Alias Description ECC score Gene Family Method Actions
Solyc08g007330.3.1 No alias component MSH4 of MSH4-MSH5 Holliday junction... 0.02 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
BP GO:0006298 mismatch repair IEA Interproscan
MF GO:0030983 mismatched DNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000287 magnesium ion binding IEP Neighborhood
CC GO:0000786 nucleosome IEP Neighborhood
MF GO:0004427 inorganic diphosphatase activity IEP Neighborhood
BP GO:0006855 drug transmembrane transport IEP Neighborhood
BP GO:0015893 drug transport IEP Neighborhood
MF GO:0030976 thiamine pyrophosphate binding IEP Neighborhood
CC GO:0032993 protein-DNA complex IEP Neighborhood
BP GO:0042221 response to chemical IEP Neighborhood
CC GO:0044427 chromosomal part IEP Neighborhood
CC GO:0044815 DNA packaging complex IEP Neighborhood
BP GO:0046677 response to antibiotic IEP Neighborhood
MF GO:1901681 sulfur compound binding IEP Neighborhood
InterPro domains Description Start Stop
IPR007696 DNA_mismatch_repair_MutS_core 305 789
IPR000432 DNA_mismatch_repair_MutS_C 864 912
IPR000432 DNA_mismatch_repair_MutS_C 964 1102
No external refs found!