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  5. AMTR_s00056p00107780

AMTR_s00056p00107780 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00056.81

Description : Protein biosynthesis.cytosolic ribosome.large subunit (LSU).LSU proteome component.RPL7 component


Gene families : OG0001283 (Archaeplastida) Phylogenetic Tree(s): OG0001283_tree ,
OG_05_0001263 (LandPlants) Phylogenetic Tree(s): OG_05_0001263_tree ,
OG_06_0001139 (SeedPlants) Phylogenetic Tree(s): OG_06_0001139_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00056p00107780
Cluster HCCA: Cluster_129

Target Alias Description ECC score Gene Family Method Actions
AT1G80750 No alias Ribosomal protein L30/L7 family protein 0.05 Archaeplastida
AT2G01250 No alias Ribosomal protein L30/L7 family protein 0.1 Archaeplastida
Cpa|evm.model.tig00020909.42 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.08 Archaeplastida
Cre12.g537800 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.06 Archaeplastida
GSVIVT01029288001 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.08 Archaeplastida
GSVIVT01029655001 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.03 Archaeplastida
GSVIVT01034230001 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.03 Archaeplastida
Gb_20650 No alias component RPL7 of LSU proteome component 0.07 Archaeplastida
LOC_Os04g51630.1 No alias component RPL7 of LSU proteome component 0.07 Archaeplastida
LOC_Os08g13690.1 No alias component RPL7 of LSU proteome component 0.07 Archaeplastida
LOC_Os08g42920.1 No alias component RPL7 of LSU proteome component 0.03 Archaeplastida
MA_10428203g0010 No alias component RPL7 of LSU proteome component 0.03 Archaeplastida
MA_109845g0010 No alias component RPL7 of LSU proteome component 0.06 Archaeplastida
MA_47548g0010 No alias component RPL7 of LSU proteome component 0.09 Archaeplastida
Mp3g13040.1 No alias component RPL7 of LSU proteome component 0.11 Archaeplastida
Pp3c11_13640V3.1 No alias Ribosomal protein L30/L7 family protein 0.04 Archaeplastida
Pp3c1_37460V3.1 No alias Ribosomal protein L30/L7 family protein 0.04 Archaeplastida
Pp3c1_39470V3.1 No alias Ribosomal protein L30/L7 family protein 0.09 Archaeplastida
Pp3c2_1610V3.1 No alias Ribosomal protein L30/L7 family protein 0.07 Archaeplastida
Pp3c2_5820V3.1 No alias Ribosomal protein L30/L7 family protein 0.05 Archaeplastida
Smo103994 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.05 Archaeplastida
Solyc06g068400.3.1 No alias component RPL7 of LSU proteome component 0.05 Archaeplastida
Solyc07g008370.4.1 No alias no hits & (original description: none) 0.12 Archaeplastida
Zm00001e003731_P002 No alias component RPL7 of LSU proteome component 0.03 Archaeplastida
Zm00001e007015_P002 No alias component RPL7 of LSU proteome component 0.1 Archaeplastida
Zm00001e022294_P001 No alias component RPL7 of LSU proteome component 0.1 Archaeplastida
Zm00001e040072_P002 No alias component RPL7 of LSU proteome component 0.04 Archaeplastida
Zm00001e041593_P001 No alias component RPL7 of LSU proteome component 0.1 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000276 mitochondrial proton-transporting ATP synthase complex, coupling factor F(o) IEP Neighborhood
CC GO:0000775 chromosome, centromeric region IEP Neighborhood
MF GO:0003674 molecular_function IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0003735 structural constituent of ribosome IEP Neighborhood
MF GO:0003743 translation initiation factor activity IEP Neighborhood
MF GO:0004045 aminoacyl-tRNA hydrolase activity IEP Neighborhood
MF GO:0004175 endopeptidase activity IEP Neighborhood
MF GO:0004298 threonine-type endopeptidase activity IEP Neighborhood
MF GO:0005048 signal sequence binding IEP Neighborhood
MF GO:0005198 structural molecule activity IEP Neighborhood
CC GO:0005575 cellular_component IEP Neighborhood
CC GO:0005622 intracellular IEP Neighborhood
CC GO:0005741 mitochondrial outer membrane IEP Neighborhood
CC GO:0005759 mitochondrial matrix IEP Neighborhood
CC GO:0005786 signal recognition particle, endoplasmic reticulum targeting IEP Neighborhood
CC GO:0005839 proteasome core complex IEP Neighborhood
CC GO:0005840 ribosome IEP Neighborhood
CC GO:0005850 eukaryotic translation initiation factor 2 complex IEP Neighborhood
BP GO:0006334 nucleosome assembly IEP Neighborhood
BP GO:0006412 translation IEP Neighborhood
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP Neighborhood
BP GO:0006518 peptide metabolic process IEP Neighborhood
BP GO:0006605 protein targeting IEP Neighborhood
BP GO:0006612 protein targeting to membrane IEP Neighborhood
BP GO:0006613 cotranslational protein targeting to membrane IEP Neighborhood
BP GO:0006614 SRP-dependent cotranslational protein targeting to membrane IEP Neighborhood
BP GO:0006621 protein retention in ER lumen IEP Neighborhood
BP GO:0006807 nitrogen compound metabolic process IEP Neighborhood
BP GO:0007059 chromosome segregation IEP Neighborhood
MF GO:0008135 translation factor activity, RNA binding IEP Neighborhood
BP GO:0008150 biological_process IEP Neighborhood
BP GO:0008152 metabolic process IEP Neighborhood
MF GO:0008312 7S RNA binding IEP Neighborhood
BP GO:0009057 macromolecule catabolic process IEP Neighborhood
BP GO:0009058 biosynthetic process IEP Neighborhood
BP GO:0009059 macromolecule biosynthetic process IEP Neighborhood
BP GO:0009987 cellular process IEP Neighborhood
CC GO:0015934 large ribosomal subunit IEP Neighborhood
BP GO:0019538 protein metabolic process IEP Neighborhood
CC GO:0019773 proteasome core complex, alpha-subunit complex IEP Neighborhood
MF GO:0019843 rRNA binding IEP Neighborhood
CC GO:0019867 outer membrane IEP Neighborhood
BP GO:0019941 modification-dependent protein catabolic process IEP Neighborhood
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Neighborhood
MF GO:0030942 endoplasmic reticulum signal peptide binding IEP Neighborhood
CC GO:0031966 mitochondrial membrane IEP Neighborhood
CC GO:0031968 organelle outer membrane IEP Neighborhood
CC GO:0031974 membrane-enclosed lumen IEP Neighborhood
BP GO:0032507 maintenance of protein location in cell IEP Neighborhood
CC GO:0032991 protein-containing complex IEP Neighborhood
CC GO:0033177 proton-transporting two-sector ATPase complex, proton-transporting domain IEP Neighborhood
MF GO:0033218 amide binding IEP Neighborhood
BP GO:0034641 cellular nitrogen compound metabolic process IEP Neighborhood
BP GO:0034645 cellular macromolecule biosynthetic process IEP Neighborhood
BP GO:0034728 nucleosome organization IEP Neighborhood
BP GO:0035437 maintenance of protein localization in endoplasmic reticulum IEP Neighborhood
BP GO:0042254 ribosome biogenesis IEP Neighborhood
MF GO:0042277 peptide binding IEP Neighborhood
BP GO:0043043 peptide biosynthetic process IEP Neighborhood
BP GO:0043170 macromolecule metabolic process IEP Neighborhood
CC GO:0043226 organelle IEP Neighborhood
CC GO:0043228 non-membrane-bounded organelle IEP Neighborhood
CC GO:0043229 intracellular organelle IEP Neighborhood
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Neighborhood
CC GO:0043233 organelle lumen IEP Neighborhood
BP GO:0043603 cellular amide metabolic process IEP Neighborhood
BP GO:0043604 amide biosynthetic process IEP Neighborhood
BP GO:0043632 modification-dependent macromolecule catabolic process IEP Neighborhood
BP GO:0044085 cellular component biogenesis IEP Neighborhood
BP GO:0044237 cellular metabolic process IEP Neighborhood
BP GO:0044238 primary metabolic process IEP Neighborhood
BP GO:0044249 cellular biosynthetic process IEP Neighborhood
BP GO:0044260 cellular macromolecule metabolic process IEP Neighborhood
BP GO:0044265 cellular macromolecule catabolic process IEP Neighborhood
BP GO:0044267 cellular protein metabolic process IEP Neighborhood
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Neighborhood
CC GO:0044391 ribosomal subunit IEP Neighborhood
CC GO:0044422 organelle part IEP Neighborhood
CC GO:0044424 intracellular part IEP Neighborhood
CC GO:0044429 mitochondrial part IEP Neighborhood
CC GO:0044444 cytoplasmic part IEP Neighborhood
CC GO:0044446 intracellular organelle part IEP Neighborhood
CC GO:0044455 mitochondrial membrane part IEP Neighborhood
CC GO:0044464 cell part IEP Neighborhood
BP GO:0045047 protein targeting to ER IEP Neighborhood
BP GO:0045185 maintenance of protein location IEP Neighborhood
CC GO:0045263 proton-transporting ATP synthase complex, coupling factor F(o) IEP Neighborhood
MF GO:0046923 ER retention sequence binding IEP Neighborhood
MF GO:0047800 cysteamine dioxygenase activity IEP Neighborhood
CC GO:0048500 signal recognition particle IEP Neighborhood
BP GO:0051235 maintenance of location IEP Neighborhood
BP GO:0051301 cell division IEP Neighborhood
BP GO:0051603 proteolysis involved in cellular protein catabolic process IEP Neighborhood
BP GO:0051651 maintenance of location in cell IEP Neighborhood
BP GO:0065004 protein-DNA complex assembly IEP Neighborhood
MF GO:0070003 threonine-type peptidase activity IEP Neighborhood
CC GO:0070013 intracellular organelle lumen IEP Neighborhood
BP GO:0070972 protein localization to endoplasmic reticulum IEP Neighborhood
BP GO:0071704 organic substance metabolic process IEP Neighborhood
BP GO:0071824 protein-DNA complex subunit organization IEP Neighborhood
BP GO:0071840 cellular component organization or biogenesis IEP Neighborhood
BP GO:0072595 maintenance of protein localization in organelle IEP Neighborhood
BP GO:0072599 establishment of protein localization to endoplasmic reticulum IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
CC GO:0098588 bounding membrane of organelle IEP Neighborhood
CC GO:0098687 chromosomal region IEP Neighborhood
CC GO:0098798 mitochondrial protein complex IEP Neighborhood
CC GO:0098800 inner mitochondrial membrane protein complex IEP Neighborhood
CC GO:0098805 whole membrane IEP Neighborhood
MF GO:0140101 catalytic activity, acting on a tRNA IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood
BP GO:1901564 organonitrogen compound metabolic process IEP Neighborhood
BP GO:1901566 organonitrogen compound biosynthetic process IEP Neighborhood
BP GO:1901576 organic substance biosynthetic process IEP Neighborhood
CC GO:1990904 ribonucleoprotein complex IEP Neighborhood
InterPro domains Description Start Stop
IPR012988 Ribosomal_L30_N 45 115
IPR016082 Ribosomal_L30_ferredoxin-like 117 168
No external refs found!