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  5. AMTR_s00056p00124480

AMTR_s00056p00124480 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00056.93

Description : Protein degradation.peptide tagging.Ubiquitin (UBQ)-anchor addition (ubiquitylation).UBQ-ligase E3 activities.RING-domain E3 ligase activities.RING-H2-type E3 ligase


Gene families : OG0000004 (Archaeplastida) Phylogenetic Tree(s): No tree available for this family ,
OG_05_0000046 (LandPlants) Phylogenetic Tree(s): OG_05_0000046_tree ,
OG_06_0002508 (SeedPlants) Phylogenetic Tree(s): OG_06_0002508_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00056p00124480
Cluster HCCA: Cluster_163

Target Alias Description ECC score Gene Family Method Actions
GSVIVT01012015001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.02 Archaeplastida
GSVIVT01032684001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.02 Archaeplastida
GSVIVT01038717001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.05 Archaeplastida
Gb_04301 No alias no hits & (original description: none) 0.02 Archaeplastida
Gb_14777 No alias RING-H2-class E3 ligase 0.04 Archaeplastida
Gb_14788 No alias RING-H2-class E3 ligase 0.02 Archaeplastida
MA_10426163g0010 No alias no hits & (original description: none) 0.04 Archaeplastida
MA_159453g0010 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
MA_280399g0010 No alias no hits & (original description: none) 0.04 Archaeplastida
Pp3c14_14600V3.1 No alias RING/U-box superfamily protein 0.01 Archaeplastida
Pp3c20_12240V3.1 No alias RING/U-box superfamily protein 0.01 Archaeplastida
Smo109459 No alias Protein degradation.peptide tagging.Ubiquitin... 0.08 Archaeplastida
Solyc01g091770.4.1 No alias RING-H2-class E3 ligase 0.02 Archaeplastida
Solyc08g082680.3.1 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
Solyc12g094385.1.1 No alias E3 ubiquitin-protein ligase ATL23 OS=Arabidopsis... 0.02 Archaeplastida
Zm00001e007208_P002 No alias RING-H2-class E3 ligase 0.04 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR001841 Znf_RING 47 91
No external refs found!