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  5. AMTR_s00056p00204920

AMTR_s00056p00204920 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00056.195

Description : RNA biosynthesis.transcriptional activation.MYB superfamily.MYB transcription factor


Gene families : OG0000002 (Archaeplastida) Phylogenetic Tree(s): No tree available for this family ,
OG_05_0000002 (LandPlants) Phylogenetic Tree(s): OG_05_0000002_tree ,
OG_06_0000210 (SeedPlants) Phylogenetic Tree(s): OG_06_0000210_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00056p00204920
Cluster HCCA: Cluster_100

Target Alias Description ECC score Gene Family Method Actions
AT2G47190 MYB2, ATMYB2 myb domain protein 2 0.02 Archaeplastida
AT3G13890 MYB26, ATMYB26, MS35 myb domain protein 26 0.04 Archaeplastida
GSVIVT01024036001 No alias RNA biosynthesis.transcriptional activation.MYB... 0.05 Archaeplastida
GSVIVT01030866001 No alias RNA biosynthesis.transcriptional activation.MYB... 0.04 Archaeplastida
GSVIVT01035041001 No alias RNA biosynthesis.transcriptional activation.MYB... 0.03 Archaeplastida
MA_130918g0010 No alias transcription factor (MYB) 0.03 Archaeplastida
MA_1589g0010 No alias transcription factor (MYB) 0.03 Archaeplastida
MA_175772g0010 No alias transcription factor (MYB) 0.05 Archaeplastida
MA_223201g0010 No alias transcription factor (MYB) 0.04 Archaeplastida
Pp3c20_8950V3.1 No alias myb domain protein r1 0.03 Archaeplastida
Pp3c9_15975V3.1 No alias myb domain protein 43 0.04 Archaeplastida
Solyc02g087960.3.1 No alias transcription factor (MYB) 0.04 Archaeplastida
Solyc04g078420.1.1 No alias transcription factor (MYB) 0.05 Archaeplastida
Zm00001e010251_P001 No alias transcription factor (MYB) 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003682 chromatin binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0006950 response to stress IEP Neighborhood
BP GO:0006952 defense response IEP Neighborhood
MF GO:0016881 acid-amino acid ligase activity IEP Neighborhood
BP GO:0040008 regulation of growth IEP Neighborhood
BP GO:0045926 negative regulation of growth IEP Neighborhood
MF GO:0046873 metal ion transmembrane transporter activity IEP Neighborhood
BP GO:0048519 negative regulation of biological process IEP Neighborhood
BP GO:0050896 response to stimulus IEP Neighborhood
InterPro domains Description Start Stop
IPR001005 SANT/Myb 14 62
IPR001005 SANT/Myb 69 111
No external refs found!