AMTR_s00056p00228640 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00056.232

Description : ABC transporter C family member 8 OS=Arabidopsis thaliana


Gene families : OG0009410 (Archaeplastida) Phylogenetic Tree(s): OG0009410_tree ,
OG_05_0007352 (LandPlants) Phylogenetic Tree(s): OG_05_0007352_tree ,
OG_06_0004452 (SeedPlants) Phylogenetic Tree(s): OG_06_0004452_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00056p00228640
Cluster HCCA: Cluster_33

Target Alias Description ECC score Gene Family Method Actions
MA_10337467g0010 No alias ABC transporter C family member 5 OS=Arabidopsis... 0.05 Archaeplastida
MA_4349242g0010 No alias no hits & (original description: none) 0.03 Archaeplastida
MA_635466g0010 No alias ABC transporter C family member 10 OS=Arabidopsis... 0.04 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
BP GO:0006810 transport IEA Interproscan
CC GO:0016021 integral component of membrane IEA Interproscan
MF GO:0016887 ATPase activity IEA Interproscan
MF GO:0042626 ATPase activity, coupled to transmembrane movement of substances IEA Interproscan
BP GO:0055085 transmembrane transport IEA Interproscan
Type GO Term Name Evidence Source
MF GO:0003968 RNA-directed 5'-3' RNA polymerase activity IEP Neighborhood
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP Neighborhood
MF GO:0016740 transferase activity IEP Neighborhood
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP Neighborhood
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP Neighborhood
MF GO:0034062 5'-3' RNA polymerase activity IEP Neighborhood
MF GO:0097747 RNA polymerase activity IEP Neighborhood
InterPro domains Description Start Stop
IPR003439 ABC_transporter-like 106 185
No external refs found!