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  5. AMTR_s00057p00112340

AMTR_s00057p00112340 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00057.90

Description : Chromatin organisation.histones.H1 linker histone


Gene families : OG0000491 (Archaeplastida) Phylogenetic Tree(s): OG0000491_tree ,
OG_05_0000417 (LandPlants) Phylogenetic Tree(s): OG_05_0000417_tree ,
OG_06_0000288 (SeedPlants) Phylogenetic Tree(s): OG_06_0000288_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00057p00112340
Cluster HCCA: Cluster_137

Target Alias Description ECC score Gene Family Method Actions
AT1G06760 No alias winged-helix DNA-binding transcription factor family protein 0.07 Archaeplastida
Cre13.g567450 No alias Chromatin organisation.histones.H1 linker histone 0.05 Archaeplastida
GSVIVT01028074001 No alias Chromatin organisation.histones.H1 linker histone 0.04 Archaeplastida
Gb_02738 No alias linker histone (H1) 0.07 Archaeplastida
LOC_Os04g18090.1 No alias linker histone (H1) 0.06 Archaeplastida
MA_102457g0010 No alias linker histone (H1) 0.03 Archaeplastida
MA_10428525g0020 No alias linker histone (H1) 0.04 Archaeplastida
MA_10436125g0020 No alias linker histone (H1) 0.03 Archaeplastida
MA_500183g0010 No alias linker histone (H1) 0.03 Archaeplastida
Mp6g03150.1 No alias linker histone (H1) 0.05 Archaeplastida
Solyc06g084020.4.1 No alias linker histone (H1) 0.08 Archaeplastida
Solyc09g083380.4.1 No alias linker histone (H1) 0.04 Archaeplastida
Zm00001e007189_P001 No alias linker histone (H1) 0.04 Archaeplastida

Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEA Interproscan
MF GO:0003677 DNA binding IEA Interproscan
CC GO:0005634 nucleus IEA Interproscan
BP GO:0006334 nucleosome assembly IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0006725 cellular aromatic compound metabolic process IEP Neighborhood
MF GO:0008198 ferrous iron binding IEP Neighborhood
MF GO:0015035 protein disulfide oxidoreductase activity IEP Neighborhood
MF GO:0015036 disulfide oxidoreductase activity IEP Neighborhood
MF GO:0016667 oxidoreductase activity, acting on a sulfur group of donors IEP Neighborhood
MF GO:0019205 nucleobase-containing compound kinase activity IEP Neighborhood
BP GO:0019725 cellular homeostasis IEP Neighborhood
BP GO:0042592 homeostatic process IEP Neighborhood
BP GO:0045454 cell redox homeostasis IEP Neighborhood
BP GO:0065008 regulation of biological quality IEP Neighborhood
InterPro domains Description Start Stop
IPR005818 Histone_H1/H5_H15 35 104
No external refs found!