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  5. AMTR_s00057p00153680

AMTR_s00057p00153680 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00057.141

Description : RNA biosynthesis.transcriptional activation.TUB transcription factor


Gene families : OG0000335 (Archaeplastida) Phylogenetic Tree(s): OG0000335_tree ,
OG_05_0000295 (LandPlants) Phylogenetic Tree(s): OG_05_0000295_tree ,
OG_06_0000341 (SeedPlants) Phylogenetic Tree(s): OG_06_0000341_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00057p00153680
Cluster HCCA: Cluster_27

Target Alias Description ECC score Gene Family Method Actions
Gb_06851 No alias transcription factor (TUB) 0.04 Archaeplastida
Gb_21935 No alias transcription factor (TUB) 0.02 Archaeplastida
Gb_22686 No alias transcription factor (TUB) 0.04 Archaeplastida
LOC_Os01g48370.1 No alias transcription factor (TUB) 0.03 Archaeplastida
LOC_Os05g48670.1 No alias transcription factor (TUB) 0.03 Archaeplastida
LOC_Os08g01290.5 No alias transcription factor (TUB) 0.02 Archaeplastida
LOC_Os12g06630.2 No alias transcription factor (TUB) 0.02 Archaeplastida
Pp3c20_2190V3.1 No alias tubby like protein 3 0.04 Archaeplastida
Solyc04g071440.3.1 No alias transcription factor (TUB) 0.03 Archaeplastida
Zm00001e007472_P001 No alias transcription factor (TUB) 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0003743 translation initiation factor activity IEP Neighborhood
BP GO:0006413 translational initiation IEP Neighborhood
MF GO:0008135 translation factor activity, RNA binding IEP Neighborhood
InterPro domains Description Start Stop
IPR000007 Tubby_C 119 415
IPR001810 F-box_dom 54 101
No external refs found!