AMTR_s00057p00188930 (evm_27.TU.AmTr_v1.0_sc...)

Aliases : evm_27.TU.AmTr_v1.0_scaffold00057.204

Description : GTP-binding protein OBGC, chloroplastic OS=Arabidopsis thaliana

Gene families : OG0006584 (Archaeplastida) Phylogenetic Tree(s): OG0006584_tree ,
OG_05_0008243 (LandPlants) Phylogenetic Tree(s): OG_05_0008243_tree ,
OG_06_0009964 (SeedPlants) Phylogenetic Tree(s): OG_06_0009964_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AMTR_s00057p00188930
Cluster	HCCA: Cluster_248

Target	Alias	Description	ECC score	Gene Family Method
AT5G18570	CPSAR1, EMB269, ATOBGC	GTP1/OBG family protein	0.04	Archaeplastida
Gb_36197	No alias	GTP-binding protein OBGC, chloroplastic OS=Arabidopsis...	0.02	Archaeplastida
LOC_Os07g47300.1	No alias	Probable GTP-binding protein OBGC1, chloroplastic...	0.02	Archaeplastida
MA_10437260g0010	No alias	GTP-binding protein OBGC, chloroplastic OS=Arabidopsis...	0.03	Archaeplastida
Pp3c7_19740V3.1	No alias	GTP1/OBG family protein	0.03	Archaeplastida
Zm00001e010930_P002	No alias	Probable GTP-binding protein OBGC1, chloroplastic...	0.02	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	IEA	Interproscan
MF	GO:0001882	nucleoside binding	None	Extended
MF	GO:0001883	purine nucleoside binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005525	GTP binding	IEA	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0019001	guanyl nucleotide binding	None	Extended
MF	GO:0032549	ribonucleoside binding	None	Extended
MF	GO:0032550	purine ribonucleoside binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032561	guanyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
BP	GO:0000726	non-recombinational repair	IEP	Neighborhood
MF	GO:0003723	RNA binding	IEP	Neighborhood
MF	GO:0003855	3-dehydroquinate dehydratase activity	IEP	Neighborhood
MF	GO:0004764	shikimate 3-dehydrogenase (NADP+) activity	IEP	Neighborhood
MF	GO:0004784	superoxide dismutase activity	IEP	Neighborhood
MF	GO:0004832	valine-tRNA ligase activity	IEP	Neighborhood
BP	GO:0006302	double-strand break repair	IEP	Neighborhood
BP	GO:0006303	double-strand break repair via nonhomologous end joining	IEP	Neighborhood
BP	GO:0006438	valyl-tRNA aminoacylation	IEP	Neighborhood
BP	GO:0006801	superoxide metabolic process	IEP	Neighborhood
MF	GO:0016721	oxidoreductase activity, acting on superoxide radicals as acceptor	IEP	Neighborhood
MF	GO:0016798	hydrolase activity, acting on glycosyl bonds	IEP	Neighborhood
MF	GO:0016836	hydro-lyase activity	IEP	Neighborhood
MF	GO:0030246	carbohydrate binding	IEP	Neighborhood
BP	GO:0072593	reactive oxygen species metabolic process	IEP	Neighborhood
MF	GO:2001070	starch binding	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR006169	GTP1_OBG_dom	354	511
IPR015349	GTP-bd_prot_GTP1/OBG_C	717	786
IPR006073	GTP_binding_domain	514	634

External Links

No external refs found!