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  5. AMTR_s00057p00202310

AMTR_s00057p00202310 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00057.235

Description : RNA biosynthesis.transcriptional activation.NF-Y transcription factor complex.NF-YB component


Gene families : OG0000142 (Archaeplastida) Phylogenetic Tree(s): OG0000142_tree ,
OG_05_0000244 (LandPlants) Phylogenetic Tree(s): OG_05_0000244_tree ,
OG_06_0000165 (SeedPlants) Phylogenetic Tree(s): OG_06_0000165_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00057p00202310
Cluster HCCA: Cluster_152

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00010p00239530 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.NF-Y... 0.03 Archaeplastida
AMTR_s00013p00129310 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.NF-Y... 0.03 Archaeplastida
AT2G47810 NF-YB5 nuclear factor Y, subunit B5 0.04 Archaeplastida
AT5G47670 NF-YB6, L1L nuclear factor Y, subunit B6 0.04 Archaeplastida
GSVIVT01010264001 No alias RNA biosynthesis.transcriptional activation.NF-Y... 0.04 Archaeplastida
GSVIVT01014689001 No alias RNA biosynthesis.transcriptional activation.NF-Y... 0.04 Archaeplastida
Gb_07866 No alias component NF-YB of NF-Y transcription factor complex 0.03 Archaeplastida
LOC_Os01g70880.1 No alias component NF-YB of NF-Y transcription factor complex 0.04 Archaeplastida
LOC_Os02g49410.1 No alias component NF-YB of NF-Y transcription factor complex 0.03 Archaeplastida
LOC_Os07g41580.1 No alias component NF-YB of NF-Y transcription factor complex 0.04 Archaeplastida
MA_8513206g0010 No alias component beta of TATA box-binding protein NC2 regulator complex 0.03 Archaeplastida
MA_922668g0010 No alias no hits & (original description: none) 0.04 Archaeplastida
Pp3c15_5200V3.1 No alias nuclear factor Y, subunit B3 0.02 Archaeplastida
Solyc01g099320.4.1 No alias component NF-YB of NF-Y transcription factor complex 0.05 Archaeplastida
Solyc04g015060.3.1 No alias component NF-YB of NF-Y transcription factor complex 0.03 Archaeplastida
Solyc04g054150.2.1 No alias no hits & (original description: none) 0.04 Archaeplastida
Solyc05g005390.3.1 No alias component NF-YB of NF-Y transcription factor complex 0.04 Archaeplastida
Solyc05g005440.3.1 No alias component NF-YB of NF-Y transcription factor complex 0.02 Archaeplastida
Solyc05g015550.2.1 No alias component NF-YB of NF-Y transcription factor complex 0.02 Archaeplastida
Solyc06g009010.1.1 No alias component NF-YB of NF-Y transcription factor complex 0.05 Archaeplastida
Solyc09g074760.1.1 No alias component NF-YB of NF-Y transcription factor complex 0.06 Archaeplastida
Solyc10g009440.4.1 No alias component NF-YB of NF-Y transcription factor complex 0.04 Archaeplastida
Zm00001e010728_P001 No alias component NF-YB of NF-Y transcription factor complex 0.02 Archaeplastida
Zm00001e015700_P001 No alias component NF-YB of NF-Y transcription factor complex 0.06 Archaeplastida
Zm00001e021676_P001 No alias component NF-YB of NF-Y transcription factor complex 0.05 Archaeplastida
Zm00001e035517_P001 No alias component NF-YB of NF-Y transcription factor complex 0.02 Archaeplastida
Zm00001e036848_P001 No alias component NF-YB of NF-Y transcription factor complex 0.03 Archaeplastida

Type GO Term Name Evidence Source
CC GO:0005622 intracellular IEA Interproscan
MF GO:0043565 sequence-specific DNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003824 catalytic activity IEP Neighborhood
MF GO:0005199 structural constituent of cell wall IEP Neighborhood
BP GO:0006952 defense response IEP Neighborhood
MF GO:0008146 sulfotransferase activity IEP Neighborhood
MF GO:0008168 methyltransferase activity IEP Neighborhood
MF GO:0008171 O-methyltransferase activity IEP Neighborhood
BP GO:0009607 response to biotic stimulus IEP Neighborhood
BP GO:0009664 plant-type cell wall organization IEP Neighborhood
MF GO:0016491 oxidoreductase activity IEP Neighborhood
MF GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen IEP Neighborhood
MF GO:0016706 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors IEP Neighborhood
MF GO:0016740 transferase activity IEP Neighborhood
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Neighborhood
MF GO:0016757 transferase activity, transferring glycosyl groups IEP Neighborhood
MF GO:0016782 transferase activity, transferring sulfur-containing groups IEP Neighborhood
MF GO:0020037 heme binding IEP Neighborhood
BP GO:0045229 external encapsulating structure organization IEP Neighborhood
MF GO:0046906 tetrapyrrole binding IEP Neighborhood
MF GO:0046983 protein dimerization activity IEP Neighborhood
BP GO:0055114 oxidation-reduction process IEP Neighborhood
BP GO:0071554 cell wall organization or biogenesis IEP Neighborhood
BP GO:0071555 cell wall organization IEP Neighborhood
BP GO:0071669 plant-type cell wall organization or biogenesis IEP Neighborhood
InterPro domains Description Start Stop
IPR003958 CBFA_NFYB_domain 49 113
No external refs found!