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  5. AMTR_s00057p00215390

AMTR_s00057p00215390 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00057.272

Description : Chromatin organisation.histones.H2A-type histone


Gene families : OG0000174 (Archaeplastida) Phylogenetic Tree(s): OG0000174_tree ,
OG_05_0000204 (LandPlants) Phylogenetic Tree(s): OG_05_0000204_tree ,
OG_06_0000166 (SeedPlants) Phylogenetic Tree(s): OG_06_0000166_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00057p00215390
Cluster HCCA: Cluster_181

Target Alias Description ECC score Gene Family Method Actions
AT1G08880 GAMMA-H2AX,... Histone superfamily protein 0.04 Archaeplastida
AT1G51060 HTA10 histone H2A 10 0.05 Archaeplastida
AT1G54690 GAMMA-H2AX,... gamma histone variant H2AX 0.04 Archaeplastida
AT3G20670 HTA13 histone H2A 13 0.06 Archaeplastida
AT4G27230 HTA2 histone H2A 2 0.07 Archaeplastida
AT5G27670 HTA7 histone H2A 7 0.06 Archaeplastida
AT5G59870 HTA6 histone H2A 6 0.05 Archaeplastida
Cre06.g264750 No alias Chromatin organisation.histones.H2A-type histone 0.04 Archaeplastida
Cre06.g264950 No alias Chromatin organisation.histones.H2A-type histone 0.04 Archaeplastida
Cre06.g265350 No alias Chromatin organisation.histones.H2A-type histone 0.04 Archaeplastida
Cre06.g266700 No alias Chromatin organisation.histones.H2A-type histone 0.04 Archaeplastida
Cre06.g268050 No alias Chromatin organisation.histones.H2A-type histone 0.03 Archaeplastida
Cre06.g268300 No alias Chromatin organisation.histones.H2A-type histone 0.03 Archaeplastida
Cre06.g271350 No alias Chromatin organisation.histones.H2A-type histone 0.04 Archaeplastida
Cre06.g273900 No alias Chromatin organisation.histones.H2A-type histone 0.04 Archaeplastida
Cre06.g274200 No alias Chromatin organisation.histones.H2A-type histone 0.04 Archaeplastida
Cre06.g274800 No alias Chromatin organisation.histones.H2A-type histone 0.03 Archaeplastida
Cre06.g275850 No alias Chromatin organisation.histones.H2A-type histone 0.04 Archaeplastida
Cre06.g276500 No alias Chromatin organisation.histones.H2A-type histone 0.04 Archaeplastida
Cre06.g276950 No alias Chromatin organisation.histones.H2A-type histone 0.04 Archaeplastida
Cre12.g504500 No alias Chromatin organisation.histones.H2A-type histone 0.04 Archaeplastida
Cre12.g504750 No alias Chromatin organisation.histones.H2A-type histone 0.04 Archaeplastida
Cre12.g505550 No alias Chromatin organisation.histones.H2A-type histone 0.04 Archaeplastida
Cre12.g506250 No alias Chromatin organisation.histones.H2A-type histone 0.04 Archaeplastida
Cre13.g570100 No alias Chromatin organisation.histones.H2A-type histone 0.04 Archaeplastida
Cre13.g590800 No alias Chromatin organisation.histones.H2A-type histone 0.02 Archaeplastida
Cre13.g591150 No alias Chromatin organisation.histones.H2A-type histone 0.02 Archaeplastida
Cre17.g708550 No alias Chromatin organisation.histones.H2A-type histone 0.04 Archaeplastida
Cre17.g709200 No alias Chromatin organisation.histones.H2A-type histone 0.04 Archaeplastida
Cre17.g710400 No alias Chromatin organisation.histones.H2A-type histone 0.04 Archaeplastida
Cre17.g711700 No alias Chromatin organisation.histones.H2A-type histone 0.04 Archaeplastida
Cre17.g713400 No alias Chromatin organisation.histones.H2A-type histone 0.04 Archaeplastida
Cre17.g714500 No alias Chromatin organisation.histones.H2A-type histone 0.04 Archaeplastida
GSVIVT01002735001 No alias Chromatin organisation.histones.H2A-type histone 0.03 Archaeplastida
GSVIVT01011034001 No alias Chromatin organisation.histones.H2A-type histone 0.04 Archaeplastida
GSVIVT01025019001 No alias Chromatin organisation.histones.H2A-type histone 0.03 Archaeplastida
GSVIVT01031123001 No alias Chromatin organisation.histones.H2A-type histone 0.05 Archaeplastida
Gb_06384 No alias histone (H2A) 0.02 Archaeplastida
Gb_07070 No alias histone (H2A) 0.03 Archaeplastida
Gb_25326 No alias histone (H2A) 0.04 Archaeplastida
Gb_37579 No alias histone (H2A) 0.02 Archaeplastida
Gb_39944 No alias histone (H2A) 0.05 Archaeplastida
LOC_Os05g02300.1 No alias histone (H2A) 0.03 Archaeplastida
LOC_Os07g36130.1 No alias histone (H2A) 0.02 Archaeplastida
LOC_Os07g36140.1 No alias histone (H2A) 0.03 Archaeplastida
LOC_Os08g33100.1 No alias histone (H2A) 0.03 Archaeplastida
LOC_Os12g25120.1 No alias histone (H2A) 0.02 Archaeplastida
MA_169054g0020 No alias histone (H2A) 0.04 Archaeplastida
MA_213048g0010 No alias histone (H2A) 0.03 Archaeplastida
MA_427046g0010 No alias histone (H2A) 0.03 Archaeplastida
MA_962778g0010 No alias histone (H2A) 0.03 Archaeplastida
Mp2g00760.1 No alias histone (H2A) 0.03 Archaeplastida
Mp3g00840.1 No alias histone (H2A) 0.03 Archaeplastida
Mp3g02370.1 No alias histone (H2A) 0.02 Archaeplastida
Pp3c5_1791V3.1 No alias histone H2A 10 0.02 Archaeplastida
Pp3c5_1800V3.1 No alias histone H2A 10 0.02 Archaeplastida
Pp3c6_29410V3.1 No alias histone H2A 10 0.02 Archaeplastida
Smo166626 No alias Chromatin organisation.histones.H2A-type histone 0.02 Archaeplastida
Smo170948 No alias Chromatin organisation.histones.H2A-type histone 0.03 Archaeplastida
Smo73637 No alias Chromatin organisation.histones.H2A-type histone 0.03 Archaeplastida
Smo76653 No alias Chromatin organisation.histones.H2A-type histone 0.02 Archaeplastida
Solyc01g099410.3.1 No alias histone (H2A) 0.08 Archaeplastida
Solyc03g005220.4.1 No alias histone (H2A) 0.03 Archaeplastida
Solyc06g084430.4.1 No alias histone (H2A) 0.06 Archaeplastida
Solyc09g010400.3.1 No alias histone (H2A) 0.04 Archaeplastida
Solyc09g074300.1.1 No alias histone (H2A) 0.04 Archaeplastida
Solyc09g082710.3.1 No alias histone (H2A) 0.09 Archaeplastida
Solyc10g006560.4.1 No alias histone (H2A) 0.06 Archaeplastida
Solyc11g073250.2.1 No alias histone (H2A) 0.03 Archaeplastida
Solyc12g005270.2.1 No alias histone (H2A) 0.06 Archaeplastida
Zm00001e010232_P001 No alias histone (H2A) 0.04 Archaeplastida
Zm00001e010515_P001 No alias histone (H2A) 0.03 Archaeplastida
Zm00001e010516_P001 No alias histone (H2A) 0.04 Archaeplastida
Zm00001e011643_P001 No alias histone (H2A) 0.06 Archaeplastida
Zm00001e020483_P001 No alias histone (H2A) 0.05 Archaeplastida
Zm00001e033014_P001 No alias histone (H2A) 0.05 Archaeplastida
Zm00001e034815_P001 No alias histone (H2A) 0.05 Archaeplastida
Zm00001e035183_P002 No alias histone (H2A) 0.02 Archaeplastida
Zm00001e038465_P002 No alias histone (H2A) 0.02 Archaeplastida
Zm00001e039735_P001 No alias histone (H2A) 0.06 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000213 tRNA-intron endonuclease activity IEP Neighborhood
BP GO:0000394 RNA splicing, via endonucleolytic cleavage and ligation IEP Neighborhood
CC GO:0000786 nucleosome IEP Neighborhood
MF GO:0001882 nucleoside binding IEP Neighborhood
MF GO:0001883 purine nucleoside binding IEP Neighborhood
MF GO:0004521 endoribonuclease activity IEP Neighborhood
MF GO:0004549 tRNA-specific ribonuclease activity IEP Neighborhood
MF GO:0005525 GTP binding IEP Neighborhood
CC GO:0005634 nucleus IEP Neighborhood
BP GO:0006220 pyrimidine nucleotide metabolic process IEP Neighborhood
BP GO:0006275 regulation of DNA replication IEP Neighborhood
BP GO:0006334 nucleosome assembly IEP Neighborhood
BP GO:0006388 tRNA splicing, via endonucleolytic cleavage and ligation IEP Neighborhood
BP GO:0006414 translational elongation IEP Neighborhood
BP GO:0007165 signal transduction IEP Neighborhood
BP GO:0007264 small GTPase mediated signal transduction IEP Neighborhood
BP GO:0008150 biological_process IEP Neighborhood
BP GO:0008380 RNA splicing IEP Neighborhood
BP GO:0009147 pyrimidine nucleoside triphosphate metabolic process IEP Neighborhood
BP GO:0009200 deoxyribonucleoside triphosphate metabolic process IEP Neighborhood
BP GO:0009211 pyrimidine deoxyribonucleoside triphosphate metabolic process IEP Neighborhood
BP GO:0009219 pyrimidine deoxyribonucleotide metabolic process IEP Neighborhood
BP GO:0009262 deoxyribonucleotide metabolic process IEP Neighborhood
BP GO:0009394 2'-deoxyribonucleotide metabolic process IEP Neighborhood
BP GO:0009719 response to endogenous stimulus IEP Neighborhood
BP GO:0009725 response to hormone IEP Neighborhood
BP GO:0010033 response to organic substance IEP Neighborhood
MF GO:0016788 hydrolase activity, acting on ester bonds IEP Neighborhood
MF GO:0016892 endoribonuclease activity, producing 3'-phosphomonoesters IEP Neighborhood
MF GO:0016894 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 3'-phosphomonoesters IEP Neighborhood
MF GO:0019001 guanyl nucleotide binding IEP Neighborhood
BP GO:0019692 deoxyribose phosphate metabolic process IEP Neighborhood
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Neighborhood
MF GO:0030234 enzyme regulator activity IEP Neighborhood
MF GO:0030337 DNA polymerase processivity factor activity IEP Neighborhood
MF GO:0032549 ribonucleoside binding IEP Neighborhood
MF GO:0032550 purine ribonucleoside binding IEP Neighborhood
MF GO:0032561 guanyl ribonucleotide binding IEP Neighborhood
CC GO:0032993 protein-DNA complex IEP Neighborhood
BP GO:0034728 nucleosome organization IEP Neighborhood
BP GO:0035556 intracellular signal transduction IEP Neighborhood
BP GO:0042221 response to chemical IEP Neighborhood
BP GO:0042254 ribosome biogenesis IEP Neighborhood
CC GO:0043226 organelle IEP Neighborhood
CC GO:0043227 membrane-bounded organelle IEP Neighborhood
CC GO:0043229 intracellular organelle IEP Neighborhood
CC GO:0043231 intracellular membrane-bounded organelle IEP Neighborhood
CC GO:0043626 PCNA complex IEP Neighborhood
BP GO:0044085 cellular component biogenesis IEP Neighborhood
CC GO:0044427 chromosomal part IEP Neighborhood
CC GO:0044796 DNA polymerase processivity factor complex IEP Neighborhood
CC GO:0044815 DNA packaging complex IEP Neighborhood
BP GO:0046080 dUTP metabolic process IEP Neighborhood
BP GO:0050789 regulation of biological process IEP Neighborhood
BP GO:0050794 regulation of cellular process IEP Neighborhood
BP GO:0051052 regulation of DNA metabolic process IEP Neighborhood
BP GO:0065004 protein-DNA complex assembly IEP Neighborhood
BP GO:0065007 biological regulation IEP Neighborhood
BP GO:0071824 protein-DNA complex subunit organization IEP Neighborhood
BP GO:0071840 cellular component organization or biogenesis IEP Neighborhood
BP GO:0072527 pyrimidine-containing compound metabolic process IEP Neighborhood
MF GO:0098772 molecular function regulator IEP Neighborhood
InterPro domains Description Start Stop
IPR007125 Histone_H2A/H2B/H3 25 97
No external refs found!