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Aliases : evm_27.TU.AmTr_v1.0_scaffold00058.26
Description : RNA biosynthesis.organelle machineries.transcription.mTERF transcription factor
Gene families : OG0001474 (Archaeplastida) Phylogenetic Tree(s): OG0001474_tree ,
OG_05_0001013 (LandPlants) Phylogenetic Tree(s): OG_05_0001013_tree ,
OG_06_0001081 (SeedPlants) Phylogenetic Tree(s): OG_06_0001081_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: AMTR_s00058p00057440 | |
| Cluster | HCCA: Cluster_153 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| GSVIVT01010499001 | No alias | RNA biosynthesis.organelle... | 0.04 | Archaeplastida | |
| Mp1g28320.1 | No alias | transcription factor (mTERF) | 0.02 | Archaeplastida | |
| Solyc01g007750.3.1 | No alias | transcription factor (mTERF) | 0.03 | Archaeplastida | |
| Solyc05g007840.3.1 | No alias | transcription factor (mTERF) | 0.03 | Archaeplastida |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| BP | GO:0001522 | pseudouridine synthesis | IEP | Neighborhood |
| MF | GO:0001871 | pattern binding | IEP | Neighborhood |
| MF | GO:0001882 | nucleoside binding | IEP | Neighborhood |
| MF | GO:0001883 | purine nucleoside binding | IEP | Neighborhood |
| MF | GO:0003676 | nucleic acid binding | IEP | Neighborhood |
| MF | GO:0003697 | single-stranded DNA binding | IEP | Neighborhood |
| MF | GO:0004133 | glycogen debranching enzyme activity | IEP | Neighborhood |
| MF | GO:0004134 | 4-alpha-glucanotransferase activity | IEP | Neighborhood |
| MF | GO:0004556 | alpha-amylase activity | IEP | Neighborhood |
| MF | GO:0005488 | binding | IEP | Neighborhood |
| MF | GO:0005525 | GTP binding | IEP | Neighborhood |
| BP | GO:0005975 | carbohydrate metabolic process | IEP | Neighborhood |
| BP | GO:0006352 | DNA-templated transcription, initiation | IEP | Neighborhood |
| MF | GO:0008168 | methyltransferase activity | IEP | Neighborhood |
| MF | GO:0008173 | RNA methyltransferase activity | IEP | Neighborhood |
| MF | GO:0009982 | pseudouridine synthase activity | IEP | Neighborhood |
| BP | GO:0016070 | RNA metabolic process | IEP | Neighborhood |
| MF | GO:0016160 | amylase activity | IEP | Neighborhood |
| MF | GO:0016741 | transferase activity, transferring one-carbon groups | IEP | Neighborhood |
| MF | GO:0016866 | intramolecular transferase activity | IEP | Neighborhood |
| MF | GO:0016884 | carbon-nitrogen ligase activity, with glutamine as amido-N-donor | IEP | Neighborhood |
| MF | GO:0016987 | sigma factor activity | IEP | Neighborhood |
| MF | GO:0019001 | guanyl nucleotide binding | IEP | Neighborhood |
| MF | GO:0030247 | polysaccharide binding | IEP | Neighborhood |
| MF | GO:0032549 | ribonucleoside binding | IEP | Neighborhood |
| MF | GO:0032550 | purine ribonucleoside binding | IEP | Neighborhood |
| MF | GO:0032561 | guanyl ribonucleotide binding | IEP | Neighborhood |
| BP | GO:0090304 | nucleic acid metabolic process | IEP | Neighborhood |
| MF | GO:0097159 | organic cyclic compound binding | IEP | Neighborhood |
| MF | GO:1901363 | heterocyclic compound binding | IEP | Neighborhood |
| MF | GO:2001070 | starch binding | IEP | Neighborhood |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR003690 | MTERF | 158 | 318 |
| No external refs found! |