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  5. AT1G52140

AT1G52140


Description : unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G16330.1); Has 114 Blast hits to 114 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 114; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).


Gene families : OG0001628 (Archaeplastida) Phylogenetic Tree(s): OG0001628_tree ,
OG_05_0001043 (LandPlants) Phylogenetic Tree(s): OG_05_0001043_tree ,
OG_06_0000525 (SeedPlants) Phylogenetic Tree(s): OG_06_0000525_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT1G52140
Cluster HCCA: Cluster_128

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00016p00243730 evm_27.TU.AmTr_v1... No description available 0.02 Archaeplastida
AT3G16330 No alias unknown protein; BEST Arabidopsis thaliana protein match... 0.07 Archaeplastida
AT4G29110 No alias unknown protein; FUNCTIONS IN: molecular_function... 0.05 Archaeplastida
Gb_14247 No alias no hits & (original description: none) 0.03 Archaeplastida
Gb_14248 No alias no hits & (original description: none) 0.03 Archaeplastida
Gb_14965 No alias no hits & (original description: none) 0.03 Archaeplastida
Gb_29515 No alias no hits & (original description: none) 0.04 Archaeplastida
Gb_33753 No alias no hits & (original description: none) 0.03 Archaeplastida
LOC_Os01g70500.1 No alias no hits & (original description: none) 0.03 Archaeplastida
LOC_Os02g13600.1 No alias no hits & (original description: none) 0.02 Archaeplastida
LOC_Os05g11160.1 No alias no hits & (original description: none) 0.05 Archaeplastida
MA_10230764g0010 No alias no hits & (original description: none) 0.04 Archaeplastida
Solyc01g079660.2.1 No alias no hits & (original description: none) 0.04 Archaeplastida
Solyc03g120930.1.1 No alias no hits & (original description: none) 0.08 Archaeplastida
Solyc06g066520.1.1 No alias no hits & (original description: none) 0.04 Archaeplastida
Solyc12g008380.1.1 No alias no hits & (original description: none) 0.04 Archaeplastida
Solyc12g044420.1.1 No alias no hits & (original description: none) 0.07 Archaeplastida
Zm00001e026877_P001 No alias no hits & (original description: none) 0.03 Archaeplastida
Zm00001e031273_P001 No alias no hits & (original description: none) 0.04 Archaeplastida
Zm00001e037235_P001 No alias no hits & (original description: none) 0.02 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003674 molecular_function ND Interproscan
CC GO:0005575 cellular_component ND Interproscan
BP GO:0008150 biological_process ND Interproscan
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Type GO Term Name Evidence Source
MF GO:0004871 obsolete signal transducer activity IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
MF GO:0005507 copper ion binding IEP Neighborhood
CC GO:0005576 extracellular region IEP Neighborhood
BP GO:0006576 cellular biogenic amine metabolic process IEP Neighborhood
BP GO:0006694 steroid biosynthetic process IEP Neighborhood
BP GO:0006869 lipid transport IEP Neighborhood
BP GO:0007154 cell communication IEP Neighborhood
BP GO:0007267 cell-cell signaling IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
MF GO:0008289 lipid binding IEP Neighborhood
BP GO:0009308 amine metabolic process IEP Neighborhood
BP GO:0009310 amine catabolic process IEP Neighborhood
CC GO:0009504 cell plate IEP Neighborhood
BP GO:0009561 megagametogenesis IEP Neighborhood
BP GO:0009698 phenylpropanoid metabolic process IEP Neighborhood
BP GO:0009832 plant-type cell wall biogenesis IEP Neighborhood
BP GO:0010383 cell wall polysaccharide metabolic process IEP Neighborhood
BP GO:0010410 hemicellulose metabolic process IEP Neighborhood
BP GO:0010413 glucuronoxylan metabolic process IEP Neighborhood
BP GO:0016128 phytosteroid metabolic process IEP Neighborhood
BP GO:0016129 phytosteroid biosynthetic process IEP Neighborhood
BP GO:0016131 brassinosteroid metabolic process IEP Neighborhood
BP GO:0016132 brassinosteroid biosynthetic process IEP Neighborhood
BP GO:0023052 signaling IEP Neighborhood
CC GO:0031224 intrinsic component of membrane IEP Neighborhood
CC GO:0031225 anchored component of membrane IEP Neighborhood
BP GO:0033397 zeatin metabolic process IEP Neighborhood
BP GO:0033398 zeatin biosynthetic process IEP Neighborhood
BP GO:0033400 trans-zeatin metabolic process IEP Neighborhood
BP GO:0033466 trans-zeatin biosynthetic process IEP Neighborhood
MF GO:0033612 receptor serine/threonine kinase binding IEP Neighborhood
BP GO:0033692 cellular polysaccharide biosynthetic process IEP Neighborhood
BP GO:0034754 cellular hormone metabolic process IEP Neighborhood
BP GO:0042402 cellular biogenic amine catabolic process IEP Neighborhood
BP GO:0042445 hormone metabolic process IEP Neighborhood
BP GO:0042446 hormone biosynthetic process IEP Neighborhood
BP GO:0042546 cell wall biogenesis IEP Neighborhood
MF GO:0043167 ion binding IEP Neighborhood
MF GO:0043169 cation binding IEP Neighborhood
BP GO:0044036 cell wall macromolecule metabolic process IEP Neighborhood
BP GO:0044038 cell wall macromolecule biosynthetic process IEP Neighborhood
BP GO:0044106 cellular amine metabolic process IEP Neighborhood
CC GO:0044425 membrane part IEP Neighborhood
BP GO:0045168 cell-cell signaling involved in cell fate commitment IEP Neighborhood
BP GO:0045491 xylan metabolic process IEP Neighborhood
BP GO:0045492 xylan biosynthetic process IEP Neighborhood
MF GO:0046872 metal ion binding IEP Neighborhood
MF GO:0046914 transition metal ion binding IEP Neighborhood
CC GO:0048046 apoplast IEP Neighborhood
BP GO:0070589 cellular component macromolecule biosynthetic process IEP Neighborhood
BP GO:0070592 cell wall polysaccharide biosynthetic process IEP Neighborhood
InterPro domains Description Start Stop
IPR008480 DUF761_pln 182 204
No external refs found!