AMTR_s00058p00173800 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00058.162

Description : Cell wall.pectin.modification and degradation.polygalacturonase activities.non-catalytic polygalacturonase regulator


Gene families : OG0000327 (Archaeplastida) Phylogenetic Tree(s): OG0000327_tree ,
OG_05_0000147 (LandPlants) Phylogenetic Tree(s): OG_05_0000147_tree ,
OG_06_0001066 (SeedPlants) Phylogenetic Tree(s): OG_06_0001066_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00058p00173800
Cluster HCCA: Cluster_255

Target Alias Description ECC score Gene Family Method Actions
AT1G60390 PG1 polygalacturonase 1 0.03 Archaeplastida
GSVIVT01013718001 No alias Polygalacturonase 1 beta-like protein 3 OS=Arabidopsis thaliana 0.04 Archaeplastida
Gb_41422 No alias non-catalytic polygalacturonase regulator 0.04 Archaeplastida
LOC_Os01g53240.1 No alias BURP domain-containing protein 3 OS=Oryza sativa subsp.... 0.03 Archaeplastida
LOC_Os08g29200.1 No alias non-catalytic polygalacturonase regulator 0.03 Archaeplastida
LOC_Os09g16010.1 No alias non-catalytic polygalacturonase regulator 0.03 Archaeplastida
MA_10428132g0010 No alias BURP domain-containing protein 3 OS=Oryza sativa subsp.... 0.02 Archaeplastida
MA_183840g0010 No alias BURP domain protein RD22 OS=Arabidopsis thaliana... 0.02 Archaeplastida
MA_196669g0010 No alias no hits & (original description: none) 0.02 Archaeplastida
MA_462957g0010 No alias no hits & (original description: none) 0.03 Archaeplastida
MA_5913418g0010 No alias no hits & (original description: none) 0.02 Archaeplastida
MA_608446g0010 No alias no hits & (original description: none) 0.02 Archaeplastida
MA_8888577g0010 No alias no hits & (original description: none) 0.02 Archaeplastida
Pp3c12_6690V3.1 No alias polygalacturonase 1 0.02 Archaeplastida
Pp3c13_16030V3.1 No alias polygalacturonase 2 0.03 Archaeplastida
Pp3c4_21630V3.1 No alias polygalacturonase 1 0.02 Archaeplastida
Solyc02g062300.3.1 No alias BURP domain-containing protein 3 OS=Oryza sativa subsp.... 0.04 Archaeplastida
Solyc02g062310.1.1 No alias BURP domain-containing protein 3 OS=Oryza sativa subsp.... 0.03 Archaeplastida
Solyc05g015300.4.1 No alias BURP domain protein RD22 OS=Arabidopsis thaliana... 0.03 Archaeplastida
Solyc08g068130.1.1 No alias BURP domain-containing protein 3 OS=Oryza sativa subsp.... 0.02 Archaeplastida
Solyc08g068140.4.1 No alias no hits & (original description: none) 0.04 Archaeplastida
Zm00001e019897_P001 No alias BURP domain-containing protein 3 OS=Oryza sativa subsp.... 0.03 Archaeplastida
Zm00001e022326_P001 No alias non-catalytic polygalacturonase regulator 0.03 Archaeplastida
Zm00001e029096_P002 No alias BURP domain-containing protein 3 OS=Oryza sativa subsp.... 0.04 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Neighborhood
MF GO:0003674 molecular_function IEP Neighborhood
MF GO:0003677 DNA binding IEP Neighborhood
MF GO:0003690 double-stranded DNA binding IEP Neighborhood
MF GO:0003824 catalytic activity IEP Neighborhood
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP Neighborhood
MF GO:0004672 protein kinase activity IEP Neighborhood
MF GO:0004674 protein serine/threonine kinase activity IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
MF GO:0005524 ATP binding IEP Neighborhood
CC GO:0005575 cellular_component IEP Neighborhood
CC GO:0005643 nuclear pore IEP Neighborhood
BP GO:0005975 carbohydrate metabolic process IEP Neighborhood
BP GO:0006259 DNA metabolic process IEP Neighborhood
BP GO:0006298 mismatch repair IEP Neighborhood
BP GO:0006464 cellular protein modification process IEP Neighborhood
BP GO:0006468 protein phosphorylation IEP Neighborhood
BP GO:0006793 phosphorus metabolic process IEP Neighborhood
BP GO:0006796 phosphate-containing compound metabolic process IEP Neighborhood
BP GO:0006807 nitrogen compound metabolic process IEP Neighborhood
MF GO:0008144 drug binding IEP Neighborhood
BP GO:0008150 biological_process IEP Neighborhood
BP GO:0008152 metabolic process IEP Neighborhood
MF GO:0008565 protein transporter activity IEP Neighborhood
BP GO:0009987 cellular process IEP Neighborhood
MF GO:0016301 kinase activity IEP Neighborhood
BP GO:0016310 phosphorylation IEP Neighborhood
MF GO:0016740 transferase activity IEP Neighborhood
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP Neighborhood
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP Neighborhood
MF GO:0016787 hydrolase activity IEP Neighborhood
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP Neighborhood
MF GO:0017076 purine nucleotide binding IEP Neighborhood
BP GO:0019538 protein metabolic process IEP Neighborhood
MF GO:0030554 adenyl nucleotide binding IEP Neighborhood
MF GO:0030983 mismatched DNA binding IEP Neighborhood
MF GO:0032553 ribonucleotide binding IEP Neighborhood
MF GO:0032555 purine ribonucleotide binding IEP Neighborhood
MF GO:0032559 adenyl ribonucleotide binding IEP Neighborhood
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Neighborhood
MF GO:0036094 small molecule binding IEP Neighborhood
BP GO:0036211 protein modification process IEP Neighborhood
MF GO:0043168 anion binding IEP Neighborhood
BP GO:0043170 macromolecule metabolic process IEP Neighborhood
BP GO:0043412 macromolecule modification IEP Neighborhood
BP GO:0044237 cellular metabolic process IEP Neighborhood
BP GO:0044238 primary metabolic process IEP Neighborhood
BP GO:0044260 cellular macromolecule metabolic process IEP Neighborhood
BP GO:0044267 cellular protein metabolic process IEP Neighborhood
CC GO:0044424 intracellular part IEP Neighborhood
BP GO:0071704 organic substance metabolic process IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
MF GO:0097367 carbohydrate derivative binding IEP Neighborhood
MF GO:0140096 catalytic activity, acting on a protein IEP Neighborhood
MF GO:1901265 nucleoside phosphate binding IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood
InterPro domains Description Start Stop
IPR004873 BURP_dom 414 553
No external refs found!