1. Home
  2. Species
  3. Amborella trichopoda
  4. Sequence
  5. AMTR_s00058p00204160

AMTR_s00058p00204160 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00058.212

Description : Protein biosynthesis.cytosolic ribosome.small subunit (SSU).SSU proteome.RPS23 component


Gene families : OG0001653 (Archaeplastida) Phylogenetic Tree(s): OG0001653_tree ,
OG_05_0002025 (LandPlants) Phylogenetic Tree(s): OG_05_0002025_tree ,
OG_06_0002565 (SeedPlants) Phylogenetic Tree(s): OG_06_0002565_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00058p00204160
Cluster HCCA: Cluster_50

Target Alias Description ECC score Gene Family Method Actions
AT5G02960 No alias Ribosomal protein S12/S23 family protein 0.23 Archaeplastida
Cpa|evm.model.tig00001264.27 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.13 Archaeplastida
Cre12.g504200 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.16 Archaeplastida
GSVIVT01016341001 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.11 Archaeplastida
GSVIVT01025120001 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.17 Archaeplastida
GSVIVT01025626001 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.08 Archaeplastida
Gb_02361 No alias component RPS23 of SSU proteome 0.07 Archaeplastida
Gb_36570 No alias component RPS23 of SSU proteome 0.12 Archaeplastida
LOC_Os01g61814.1 No alias component RPS23 of SSU proteome 0.16 Archaeplastida
LOC_Os03g60400.1 No alias component RPS23 of SSU proteome 0.16 Archaeplastida
MA_10436470g0020 No alias component RPS23 of SSU proteome 0.2 Archaeplastida
MA_19871g0020 No alias component RPS23 of SSU proteome 0.07 Archaeplastida
MA_9043057g0010 No alias component RPS23 of SSU proteome 0.07 Archaeplastida
Mp2g08680.1 No alias component RPS23 of SSU proteome 0.25 Archaeplastida
Pp3c11_11070V3.1 No alias Ribosomal protein S12/S23 family protein 0.1 Archaeplastida
Pp3c12_25120V3.1 No alias Ribosomal protein S12/S23 family protein 0.09 Archaeplastida
Pp3c2_24130V3.1 No alias Ribosomal protein S12/S23 family protein 0.18 Archaeplastida
Pp3c4_3120V3.1 No alias Ribosomal protein S12/S23 family protein 0.12 Archaeplastida
Pp3c7_14200V3.1 No alias Ribosomal protein S12/S23 family protein 0.13 Archaeplastida
Smo145246 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.08 Archaeplastida
Solyc09g007350.3.1 No alias component RPS23 of SSU proteome 0.14 Archaeplastida
Solyc10g084310.2.1 No alias component RPS23 of SSU proteome 0.15 Archaeplastida
Solyc10g086020.3.1 No alias component RPS23 of SSU proteome 0.19 Archaeplastida
Zm00001e006170_P001 No alias component RPS23 of SSU proteome 0.19 Archaeplastida
Zm00001e011770_P001 No alias component RPS23 of SSU proteome 0.08 Archaeplastida
Zm00001e019377_P001 No alias component RPS23 of SSU proteome 0.21 Archaeplastida
Zm00001e027265_P001 No alias component RPS23 of SSU proteome 0.15 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005622 intracellular IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
CC GO:0000276 mitochondrial proton-transporting ATP synthase complex, coupling factor F(o) IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP Neighborhood
MF GO:0004197 cysteine-type endopeptidase activity IEP Neighborhood
CC GO:0005759 mitochondrial matrix IEP Neighborhood
BP GO:0006351 transcription, DNA-templated IEP Neighborhood
BP GO:0006457 protein folding IEP Neighborhood
MF GO:0008440 inositol-1,4,5-trisphosphate 3-kinase activity IEP Neighborhood
CC GO:0015934 large ribosomal subunit IEP Neighborhood
CC GO:0016272 prefoldin complex IEP Neighborhood
BP GO:0018130 heterocycle biosynthetic process IEP Neighborhood
BP GO:0019438 aromatic compound biosynthetic process IEP Neighborhood
MF GO:0019843 rRNA binding IEP Neighborhood
CC GO:0031974 membrane-enclosed lumen IEP Neighborhood
BP GO:0032774 RNA biosynthetic process IEP Neighborhood
CC GO:0033177 proton-transporting two-sector ATPase complex, proton-transporting domain IEP Neighborhood
MF GO:0034062 5'-3' RNA polymerase activity IEP Neighborhood
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP Neighborhood
CC GO:0043233 organelle lumen IEP Neighborhood
CC GO:0044391 ribosomal subunit IEP Neighborhood
CC GO:0044429 mitochondrial part IEP Neighborhood
CC GO:0044455 mitochondrial membrane part IEP Neighborhood
CC GO:0045263 proton-transporting ATP synthase complex, coupling factor F(o) IEP Neighborhood
MF GO:0051766 inositol trisphosphate kinase activity IEP Neighborhood
CC GO:0070013 intracellular organelle lumen IEP Neighborhood
BP GO:0097659 nucleic acid-templated transcription IEP Neighborhood
MF GO:0097747 RNA polymerase activity IEP Neighborhood
CC GO:0098798 mitochondrial protein complex IEP Neighborhood
CC GO:0098800 inner mitochondrial membrane protein complex IEP Neighborhood
InterPro domains Description Start Stop
IPR006032 Ribosomal_S12/S23 4 135
No external refs found!