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  5. AMTR_s00059p00167980

AMTR_s00059p00167980 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00059.160

Description : Pentatricopeptide repeat-containing protein At4g33990 OS=Arabidopsis thaliana


Gene families : OG0000000 (Archaeplastida) Phylogenetic Tree(s): No tree available for this family ,
OG_05_0011956 (LandPlants) Phylogenetic Tree(s): OG_05_0011956_tree ,
OG_06_0012718 (SeedPlants) Phylogenetic Tree(s): OG_06_0012718_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00059p00167980
Cluster HCCA: Cluster_149

Target Alias Description ECC score Gene Family Method Actions
GSVIVT01009974001 No alias Pentatricopeptide repeat-containing protein At3g26540... 0.03 Archaeplastida
GSVIVT01017989001 No alias RNA processing.organelle machineries.RNA... 0.04 Archaeplastida
Smo118230 No alias Pentatricopeptide repeat-containing protein At3g12770... 0.02 Archaeplastida
Smo126194 No alias Pentatricopeptide repeat-containing protein At2g33680... 0.01 Archaeplastida
Solyc01g095160.3.1 No alias Pentatricopeptide repeat-containing protein At4g37170... 0.03 Archaeplastida
Solyc03g114010.3.1 No alias Pentatricopeptide repeat-containing protein At2g29760,... 0.08 Archaeplastida
Solyc07g009220.2.1 No alias Pentatricopeptide repeat-containing protein At2g34400... 0.06 Archaeplastida
Zm00001e033335_P001 No alias Pentatricopeptide repeat-containing protein At5g61800... 0.05 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0005507 copper ion binding IEP Neighborhood
BP GO:0006855 drug transmembrane transport IEP Neighborhood
MF GO:0015238 drug transmembrane transporter activity IEP Neighborhood
MF GO:0015291 secondary active transmembrane transporter activity IEP Neighborhood
MF GO:0015297 antiporter activity IEP Neighborhood
BP GO:0015893 drug transport IEP Neighborhood
MF GO:0016706 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors IEP Neighborhood
MF GO:0051213 dioxygenase activity IEP Neighborhood
BP GO:0055114 oxidation-reduction process IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 60 86
IPR002885 Pentatricopeptide_repeat 132 158
IPR002885 Pentatricopeptide_repeat 161 180
No external refs found!