1. Home
  2. Species
  3. Amborella trichopoda
  4. Sequence
  5. AMTR_s00059p00175950

AMTR_s00059p00175950


Description : Pentatricopeptide repeat-containing protein At1g08070, chloroplastic OS=Arabidopsis thaliana


Gene families : OG0006821 (Archaeplastida) Phylogenetic Tree(s): OG0006821_tree ,
OG_05_0009059 (LandPlants) Phylogenetic Tree(s): OG_05_0009059_tree ,
OG_06_0009047 (SeedPlants) Phylogenetic Tree(s): OG_06_0009047_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00059p00175950
Cluster HCCA: Cluster_52

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00002p00268120 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At2g29760,... 0.06 Archaeplastida
AMTR_s00003p00144440 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g31920... 0.03 Archaeplastida
AMTR_s00010p00121230 No alias Pentatricopeptide repeat-containing protein At2g01510,... 0.02 Archaeplastida
AMTR_s00016p00241430 evm_27.TU.AmTr_v1... No description available 0.07 Archaeplastida
AMTR_s00016p00242080 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g59720,... 0.02 Archaeplastida
AMTR_s00019p00093260 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At2g22410,... 0.04 Archaeplastida
AMTR_s00029p00051450 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At3g56550... 0.08 Archaeplastida
AMTR_s00029p00110030 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g08070,... 0.08 Archaeplastida
AMTR_s00032p00145740 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g15510,... 0.05 Archaeplastida
AMTR_s00092p00099090 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g08070,... 0.11 Archaeplastida
AMTR_s01859p00006880 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At2g29760,... 0.09 Archaeplastida
Solyc02g072010.3.1 No alias Pentatricopeptide repeat-containing protein At4g18840... 0.06 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0016757 transferase activity, transferring glycosyl groups IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 51 98
IPR002885 Pentatricopeptide_repeat 152 200
No external refs found!