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  5. AMTR_s00059p00213590

AMTR_s00059p00213590 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00059.250

Description : Protein degradation.peptidase families.serine-type peptidase activities.chloroplast Clp-type protease complex.ClpT plant-specific stabilizing component


Gene families : OG0006253 (Archaeplastida) Phylogenetic Tree(s): OG0006253_tree ,
OG_05_0004874 (LandPlants) Phylogenetic Tree(s): OG_05_0004874_tree ,
OG_06_0005160 (SeedPlants) Phylogenetic Tree(s): OG_06_0005160_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00059p00213590
Cluster HCCA: Cluster_27

Target Alias Description ECC score Gene Family Method Actions
AT4G12060 No alias Double Clp-N motif protein 0.03 Archaeplastida
AT4G25370 No alias Double Clp-N motif protein 0.03 Archaeplastida
LOC_Os03g14280.1 No alias plant-specific stabilizing component ClpT of chloroplast... 0.02 Archaeplastida
MA_12551g0010 No alias plant-specific stabilizing component ClpT of chloroplast... 0.03 Archaeplastida
Mp6g19150.1 No alias plant-specific stabilizing component ClpT of chloroplast... 0.03 Archaeplastida
Solyc08g079660.3.1 No alias plant-specific stabilizing component ClpT of chloroplast... 0.02 Archaeplastida
Zm00001e001033_P002 No alias plant-specific stabilizing component ClpT of chloroplast... 0.03 Archaeplastida

Type GO Term Name Evidence Source
BP GO:0019538 protein metabolic process IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000159 protein phosphatase type 2A complex IEP Neighborhood
CC GO:0005643 nuclear pore IEP Neighborhood
BP GO:0006643 membrane lipid metabolic process IEP Neighborhood
BP GO:0006664 glycolipid metabolic process IEP Neighborhood
CC GO:0008287 protein serine/threonine phosphatase complex IEP Neighborhood
MF GO:0008565 protein transporter activity IEP Neighborhood
BP GO:0009247 glycolipid biosynthetic process IEP Neighborhood
BP GO:0030258 lipid modification IEP Neighborhood
BP GO:0030259 lipid glycosylation IEP Neighborhood
CC GO:0032991 protein-containing complex IEP Neighborhood
BP GO:0046467 membrane lipid biosynthetic process IEP Neighborhood
BP GO:0070085 glycosylation IEP Neighborhood
CC GO:1903293 phosphatase complex IEP Neighborhood
BP GO:1903509 liposaccharide metabolic process IEP Neighborhood
InterPro domains Description Start Stop
IPR004176 Clp_N 187 230
IPR004176 Clp_N 104 156
No external refs found!