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  5. AMTR_s00059p00215360

AMTR_s00059p00215360 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00059.255

Description : RNA biosynthesis.RNA polymerase II-dependent transcription.phosphorylation/dephosphorylation.polymerase-II kinase complex (CTDK-I).cyclin-type regulator component


Gene families : OG0000352 (Archaeplastida) Phylogenetic Tree(s): OG0000352_tree ,
OG_05_0001681 (LandPlants) Phylogenetic Tree(s): OG_05_0001681_tree ,
OG_06_0001929 (SeedPlants) Phylogenetic Tree(s): OG_06_0001929_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00059p00215360
Cluster HCCA: Cluster_219

Target Alias Description ECC score Gene Family Method Actions
Cre10.g453050 No alias Cyclin-T1-4 OS=Oryza sativa subsp. japonica 0.01 Archaeplastida
MA_10429315g0010 No alias cyclin (CYCL) 0.03 Archaeplastida
Mp3g00720.1 No alias cyclin (CYCT). regulatory component of CTDK-I... 0.02 Archaeplastida
Pp3c2_24700V3.1 No alias Cyclin family protein 0.04 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000151 ubiquitin ligase complex IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0003743 translation initiation factor activity IEP Neighborhood
MF GO:0003954 NADH dehydrogenase activity IEP Neighborhood
MF GO:0004842 ubiquitin-protein transferase activity IEP Neighborhood
BP GO:0006413 translational initiation IEP Neighborhood
MF GO:0008135 translation factor activity, RNA binding IEP Neighborhood
MF GO:0008137 NADH dehydrogenase (ubiquinone) activity IEP Neighborhood
MF GO:0008233 peptidase activity IEP Neighborhood
MF GO:0008237 metallopeptidase activity IEP Neighborhood
BP GO:0016567 protein ubiquitination IEP Neighborhood
MF GO:0016651 oxidoreductase activity, acting on NAD(P)H IEP Neighborhood
MF GO:0016655 oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor IEP Neighborhood
MF GO:0019787 ubiquitin-like protein transferase activity IEP Neighborhood
BP GO:0032446 protein modification by small protein conjugation IEP Neighborhood
MF GO:0048038 quinone binding IEP Neighborhood
MF GO:0050136 NADH dehydrogenase (quinone) activity IEP Neighborhood
MF GO:0051539 4 iron, 4 sulfur cluster binding IEP Neighborhood
MF GO:0070011 peptidase activity, acting on L-amino acid peptides IEP Neighborhood
BP GO:0070647 protein modification by small protein conjugation or removal IEP Neighborhood
InterPro domains Description Start Stop
IPR006671 Cyclin_N 35 176
No external refs found!